Human Gene LINC00639 (uc001wun.3)
  Description: Homo sapiens long intergenic non-protein coding RNA 639 (LINC00639), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr14:39,218,543-39,417,475 Size: 198,933 Total Exon Count: 7 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:39,218,543-39,417,475)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerH-INVHGNCLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.26 RPKM in Brain - Spinal cord (cervical c-1)
Total median expression: 19.10 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC035119 - Homo sapiens hypothetical protein LOC283547, mRNA (cDNA clone IMAGE:5263294).
AK125018 - Homo sapiens cDNA FLJ43028 fis, clone BRTHA3000297.
AK127318 - Homo sapiens cDNA FLJ45388 fis, clone BRHIP3024820.
JD262905 - Sequence 243929 from Patent EP1572962.
JD283843 - Sequence 264867 from Patent EP1572962.
JD559597 - Sequence 540621 from Patent EP1572962.
BC113646 - Homo sapiens cDNA clone IMAGE:8322698.
BC113672 - Homo sapiens cDNA clone IMAGE:8322724.
JD282366 - Sequence 263390 from Patent EP1572962.
JD503108 - Sequence 484132 from Patent EP1572962.
JD555636 - Sequence 536660 from Patent EP1572962.
JD221199 - Sequence 202223 from Patent EP1572962.
JD511205 - Sequence 492229 from Patent EP1572962.
JD220495 - Sequence 201519 from Patent EP1572962.
JD386362 - Sequence 367386 from Patent EP1572962.
JD318856 - Sequence 299880 from Patent EP1572962.
JD492878 - Sequence 473902 from Patent EP1572962.
JD123192 - Sequence 104216 from Patent EP1572962.
JD161772 - Sequence 142796 from Patent EP1572962.
JD517218 - Sequence 498242 from Patent EP1572962.
JD396484 - Sequence 377508 from Patent EP1572962.
JD317767 - Sequence 298791 from Patent EP1572962.
JD449439 - Sequence 430463 from Patent EP1572962.
JD247862 - Sequence 228886 from Patent EP1572962.
JD553146 - Sequence 534170 from Patent EP1572962.
JD098702 - Sequence 79726 from Patent EP1572962.
JD196910 - Sequence 177934 from Patent EP1572962.
JD156046 - Sequence 137070 from Patent EP1572962.
JD192628 - Sequence 173652 from Patent EP1572962.
JD497413 - Sequence 478437 from Patent EP1572962.
JD174170 - Sequence 155194 from Patent EP1572962.
JD091933 - Sequence 72957 from Patent EP1572962.
JD132670 - Sequence 113694 from Patent EP1572962.
JD226982 - Sequence 208006 from Patent EP1572962.
JD045740 - Sequence 26764 from Patent EP1572962.
JD361080 - Sequence 342104 from Patent EP1572962.
JD057441 - Sequence 38465 from Patent EP1572962.
JD191467 - Sequence 172491 from Patent EP1572962.
JD122494 - Sequence 103518 from Patent EP1572962.
JD432125 - Sequence 413149 from Patent EP1572962.
JD416841 - Sequence 397865 from Patent EP1572962.
JD124136 - Sequence 105160 from Patent EP1572962.
JD420641 - Sequence 401665 from Patent EP1572962.
JD533967 - Sequence 514991 from Patent EP1572962.
JD050905 - Sequence 31929 from Patent EP1572962.
JD136805 - Sequence 117829 from Patent EP1572962.
JD389610 - Sequence 370634 from Patent EP1572962.
JD335793 - Sequence 316817 from Patent EP1572962.
JD443300 - Sequence 424324 from Patent EP1572962.
JD283110 - Sequence 264134 from Patent EP1572962.
JD492208 - Sequence 473232 from Patent EP1572962.
JD319788 - Sequence 300812 from Patent EP1572962.
JD185178 - Sequence 166202 from Patent EP1572962.
JD094901 - Sequence 75925 from Patent EP1572962.
JD305502 - Sequence 286526 from Patent EP1572962.
JD167943 - Sequence 148967 from Patent EP1572962.
JD098458 - Sequence 79482 from Patent EP1572962.
JD062427 - Sequence 43451 from Patent EP1572962.
JD103575 - Sequence 84599 from Patent EP1572962.
JD059779 - Sequence 40803 from Patent EP1572962.
JD087398 - Sequence 68422 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK125018
UCSC ID: uc001wun.3
RefSeq Accession: NR_039982

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: AK125018.1
exon count: 7CDS single in 3' UTR: no RNA size: 4494
ORF size: 0CDS single in intron: no Alignment % ID: 99.93
txCdsPredict score: -108.00frame shift in genome: no % Coverage: 99.96
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.