Human Gene RBM45 (uc002ulv.3)
  Description: Homo sapiens RNA binding motif protein 45 (RBM45), mRNA.
RefSeq Summary (NM_152945): This gene encodes a member of the RNA recognition motif (RRM)-type RNA-binding family of proteins. This protein exhibits preferential binding to poly(C) RNA. Initial cloning of this gene found that the rat ortholog was dynamically expressed in the developing rat brain. This protein has been localized to inclusion bodies in the brain and spinal cord of amyotrophic lateral sclerosis and Alzheimer's patients. A pseudogene has been identified on chromosome 8. [provided by RefSeq, Feb 2015].
Transcript (Including UTRs)
   Position: hg19 chr2:178,977,182-178,994,382 Size: 17,201 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg19 chr2:178,977,274-178,990,903 Size: 13,630 Coding Exon Count: 9 

Page IndexSequence and LinksPrimersCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:178,977,182-178,994,382)mRNA (may differ from genome)Protein (474 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
OMIMPubMedTreefamUniProtKBBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.98 RPKM in Pituitary
Total median expression: 125.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -38.6092-0.420 Picture PostScript Text
3' UTR -60.70267-0.227 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PF13893 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

SCOP Domains:
54928 - RNA-binding domain, RBD

ModBase Predicted Comparative 3D Structure on Q8IUH3-3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserGenome BrowserNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsemblFlyBase  
 Protein SequenceProtein SequenceProtein Sequence  
 AlignmentAlignmentAlignment  

-  Descriptions from all associated GenBank mRNAs
  LF205734 - JP 2014500723-A/13237: Polycomb-Associated Non-Coding RNAs.
AF526533 - Homo sapiens putative RNA binding protein RB-1 mRNA, complete cds.
BC037837 - Homo sapiens RNA binding motif protein 45, mRNA (cDNA clone IMAGE:4813419), with apparent retained intron.
BC066549 - Homo sapiens RNA binding motif protein 45, mRNA (cDNA clone MGC:70459 IMAGE:5748065), complete cds.
AK126575 - Homo sapiens cDNA FLJ44612 fis, clone BRACE2012625.
JD213938 - Sequence 194962 from Patent EP1572962.
JD051103 - Sequence 32127 from Patent EP1572962.
AB036991 - Homo sapiens drb1 mRNA for developmentally regulated RNA-binding protein 1, complete cds.
CU688160 - Synthetic construct Homo sapiens gateway clone IMAGE:100022847 5' read RBM45 mRNA.
HQ447489 - Synthetic construct Homo sapiens clone IMAGE:100070822; CCSB014231_01 developmentally regulated RNA-binding protein 1 (RBM45) gene, encodes complete protein.
KJ895462 - Synthetic construct Homo sapiens clone ccsbBroadEn_04856 RBM45 gene, encodes complete protein.
LF347596 - JP 2014500723-A/155099: Polycomb-Associated Non-Coding RNAs.
LF347597 - JP 2014500723-A/155100: Polycomb-Associated Non-Coding RNAs.
LF347598 - JP 2014500723-A/155101: Polycomb-Associated Non-Coding RNAs.
JD305465 - Sequence 286489 from Patent EP1572962.
JD094636 - Sequence 75660 from Patent EP1572962.
JD471179 - Sequence 452203 from Patent EP1572962.
JD182055 - Sequence 163079 from Patent EP1572962.
JD554310 - Sequence 535334 from Patent EP1572962.
JD301134 - Sequence 282158 from Patent EP1572962.
JD566184 - Sequence 547208 from Patent EP1572962.
JD548393 - Sequence 529417 from Patent EP1572962.
MA583173 - JP 2018138019-A/155099: Polycomb-Associated Non-Coding RNAs.
MA583174 - JP 2018138019-A/155100: Polycomb-Associated Non-Coding RNAs.
MA583175 - JP 2018138019-A/155101: Polycomb-Associated Non-Coding RNAs.
MA441311 - JP 2018138019-A/13237: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: DRB1, DRBP1, NM_152945, NP_694453, Q8IUH3-3
UCSC ID: uc002ulv.3
RefSeq Accession: NM_152945
Protein: Q8IUH3-3, splice isoform of Q8IUH3 CCDS: CCDS33335.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_152945.2
exon count: 10CDS single in 3' UTR: no RNA size: 1860
ORF size: 1425CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3050.00frame shift in genome: no % Coverage: 95.91
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.