Human Gene USP19 (uc011bch.2)
  Description: Homo sapiens ubiquitin specific peptidase 19 (USP19), transcript variant 1, mRNA.
RefSeq Summary (NM_001199160): Protein ubiquitination controls many intracellular processes, including cell cycle progression, transcriptional activation, and signal transduction. This dynamic process, involving ubiquitin conjugating enzymes and deubiquitinating enzymes, adds and removes ubiquitin. Deubiquitinating enzymes are cysteine proteases that specifically cleave ubiquitin from ubiquitin-conjugated protein substrates. This protein is a ubiquitin protein ligase and plays a role in muscle wasting. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2017].
Transcript (Including UTRs)
   Position: hg19 chr3:49,146,106-49,158,371 Size: 12,266 Total Exon Count: 27 Strand: -
Coding Region
   Position: hg19 chr3:49,146,391-49,156,578 Size: 10,188 Coding Exon Count: 26 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:49,146,106-49,158,371)mRNA (may differ from genome)Protein (1419 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
H-INVHGNCLynxMGIOMIMPubMed
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: E9PEG8_HUMAN
DESCRIPTION: RecName: Full=Ubiquitin carboxyl-terminal hydrolase; EC=3.4.19.12;
CATALYTIC ACTIVITY: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C- terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
SIMILARITY: Belongs to the peptidase C19 family.
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 21.20 RPKM in Testis
Total median expression: 739.72 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -151.20319-0.474 Picture PostScript Text
3' UTR -111.10285-0.390 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007052 - CS-like_domain
IPR017447 - CS_domain
IPR015054 - DUF1872
IPR008978 - HSP20-like_chaperone
IPR018200 - Pept_C19ubi-hydrolase_C_CS
IPR001394 - Peptidase_C19
IPR002893 - Znf_MYND

Pfam Domains:
PF00443 - Ubiquitin carboxyl-terminal hydrolase
PF01753 - MYND finger
PF04969 - CS domain
PF13423 - Ubiquitin carboxyl-terminal hydrolase
PF16602 - Linker region of USP19 deubiquitinase

SCOP Domains:
49764 - HSP20-like chaperones
54001 - Cysteine proteinases

ModBase Predicted Comparative 3D Structure on E9PEG8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF208631 - JP 2014500723-A/16134: Polycomb-Associated Non-Coding RNAs.
BC106029 - Homo sapiens ubiquitin specific peptidase 19, mRNA (cDNA clone IMAGE:6151634), partial cds.
BC142660 - Homo sapiens ubiquitin specific peptidase 19, mRNA (cDNA clone IMAGE:40148084), partial cds.
BC014934 - Homo sapiens ubiquitin specific peptidase 19, mRNA (cDNA clone IMAGE:3920431).
BC082241 - Homo sapiens ubiquitin specific peptidase 19, mRNA (cDNA clone IMAGE:4841019), partial cds.
BC142727 - Homo sapiens ubiquitin specific peptidase 19, mRNA (cDNA clone IMAGE:40148933), partial cds.
AK300425 - Homo sapiens cDNA FLJ61404 complete cds, highly similar to Ubiquitin carboxyl-terminal hydrolase 19 (EC 3.1.2.15).
BC065909 - Homo sapiens ubiquitin specific peptidase 19, mRNA (cDNA clone IMAGE:4859467), partial cds.
BC146752 - Homo sapiens ubiquitin specific peptidase 19, mRNA (cDNA clone MGC:166816 IMAGE:9007186), complete cds.
AB020698 - Homo sapiens KIAA0891 mRNA for KIAA0891 protein.
AK294756 - Homo sapiens cDNA FLJ54450 complete cds, highly similar to Ubiquitin carboxyl-terminal hydrolase 19 (EC 3.1.2.15).
BC128088 - Homo sapiens ubiquitin specific peptidase 19, mRNA (cDNA clone IMAGE:40108548), with apparent retained intron.
AB384036 - Synthetic construct DNA, clone: pF1KSDA0891, Homo sapiens USP19 gene for ubiquitin carboxyl-terminal hydrolase 19, complete cds, without stop codon, in Flexi system.
MA444208 - JP 2018138019-A/16134: Polycomb-Associated Non-Coding RNAs.
BC048269 - Homo sapiens ubiquitin specific peptidase 19, mRNA (cDNA clone IMAGE:4478169), partial cds.
EF036501 - Homo sapiens USP19 protein mRNA, partial cds.
LF378579 - JP 2014500723-A/186082: Polycomb-Associated Non-Coding RNAs.
JD428795 - Sequence 409819 from Patent EP1572962.
JD423762 - Sequence 404786 from Patent EP1572962.
JD272625 - Sequence 253649 from Patent EP1572962.
JD543901 - Sequence 524925 from Patent EP1572962.
JD146330 - Sequence 127354 from Patent EP1572962.
JD220811 - Sequence 201835 from Patent EP1572962.
JD467861 - Sequence 448885 from Patent EP1572962.
JD459465 - Sequence 440489 from Patent EP1572962.
JD476479 - Sequence 457503 from Patent EP1572962.
JD151841 - Sequence 132865 from Patent EP1572962.
LF378578 - JP 2014500723-A/186081: Polycomb-Associated Non-Coding RNAs.
LF378577 - JP 2014500723-A/186080: Polycomb-Associated Non-Coding RNAs.
LF378576 - JP 2014500723-A/186079: Polycomb-Associated Non-Coding RNAs.
MA614156 - JP 2018138019-A/186082: Polycomb-Associated Non-Coding RNAs.
MA614155 - JP 2018138019-A/186081: Polycomb-Associated Non-Coding RNAs.
MA614154 - JP 2018138019-A/186080: Polycomb-Associated Non-Coding RNAs.
MA614153 - JP 2018138019-A/186079: Polycomb-Associated Non-Coding RNAs.
LF378575 - JP 2014500723-A/186078: Polycomb-Associated Non-Coding RNAs.
AK296447 - Homo sapiens cDNA FLJ54466 complete cds, moderately similar to Rattus norvegicus ubiquitin specific protease 19 (Usp19), mRNA.
LF378574 - JP 2014500723-A/186077: Polycomb-Associated Non-Coding RNAs.
LF378573 - JP 2014500723-A/186076: Polycomb-Associated Non-Coding RNAs.
LF378572 - JP 2014500723-A/186075: Polycomb-Associated Non-Coding RNAs.
LF378571 - JP 2014500723-A/186074: Polycomb-Associated Non-Coding RNAs.
LF378570 - JP 2014500723-A/186073: Polycomb-Associated Non-Coding RNAs.
JD467568 - Sequence 448592 from Patent EP1572962.
JD479864 - Sequence 460888 from Patent EP1572962.
JD436430 - Sequence 417454 from Patent EP1572962.
JD359967 - Sequence 340991 from Patent EP1572962.
MA614152 - JP 2018138019-A/186078: Polycomb-Associated Non-Coding RNAs.
MA614151 - JP 2018138019-A/186077: Polycomb-Associated Non-Coding RNAs.
MA614150 - JP 2018138019-A/186076: Polycomb-Associated Non-Coding RNAs.
MA614149 - JP 2018138019-A/186075: Polycomb-Associated Non-Coding RNAs.
MA614148 - JP 2018138019-A/186074: Polycomb-Associated Non-Coding RNAs.
MA614147 - JP 2018138019-A/186073: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: E9PEG8, E9PEG8_HUMAN, NM_001199160, NP_001186089
UCSC ID: uc011bch.2
RefSeq Accession: NM_001199160
Protein: E9PEG8 CCDS: CCDS56254.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001199160.1
exon count: 27CDS single in 3' UTR: no RNA size: 4878
ORF size: 4260CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 7545.00frame shift in genome: no % Coverage: 99.71
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.