Human Gene TMPRSS11D (uc003hdq.3)
  Description: Homo sapiens transmembrane protease, serine 11D (TMPRSS11D), mRNA.
RefSeq Summary (NM_004262): This gene encodes a trypsin-like serine protease released from the submucosal serous glands onto mucous membrane. It is a type II integral membrane protein and has 29-38% identity in the sequence of the catalytic region with human hepsin, enteropeptidase, acrosin, and mast cell tryptase. The noncatalytic region has little similarity to other known proteins. This protein may play some biological role in the host defense system on the mucous membrane independently of or in cooperation with other substances in airway mucous or bronchial secretions. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr4:68,686,594-68,749,716 Size: 63,123 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg19 chr4:68,688,055-68,749,651 Size: 61,597 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:68,686,594-68,749,716)mRNA (may differ from genome)Protein (418 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TM11D_HUMAN
DESCRIPTION: RecName: Full=Transmembrane protease serine 11D; EC=3.4.21.-; AltName: Full=Airway trypsin-like protease; Contains: RecName: Full=Transmembrane protease serine 11D non-catalytic chain; Contains: RecName: Full=Transmembrane protease serine 11D catalytic chain; Flags: Precursor;
FUNCTION: May play some biological role in the host defense system on the mucous membrane independently of or in cooperation with other substances in airway mucous or bronchial secretions.
CATALYTIC ACTIVITY: Preferentially cleaves the C-terminal side of arginine residues at the P1 position of certain peptides, cleaving Boc-Phe-Ser-Arg-4-methylcoumaryl-7-amide most efficiently and having an optimum pH of 8.6 with this substrate.
ENZYME REGULATION: Strongly inhibited by diisopropyl fluorophosphate, leupeptin, antipain, aprotinin, and soybean trypsin inhibitor, but hardly inhibited by secretory leukocyte protease inhibitor at 10 microM.
SUBUNIT: Monomer.
SUBCELLULAR LOCATION: Cell membrane; Single-pass type II membrane protein. Note=Activated by cleavage and secreted.
SUBCELLULAR LOCATION: Transmembrane protease serine 11D catalytic chain: Secreted. Note=Activated by cleavage and secreted.
TISSUE SPECIFICITY: Located in the cells of the submucosal serous glands of the bronchi and trachea.
SIMILARITY: Belongs to the peptidase S1 family.
SIMILARITY: Contains 1 peptidase S1 domain.
SIMILARITY: Contains 1 SEA domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TMPRSS11D
Diseases sorted by gene-association score: brain stem cancer (3), brain stem glioma (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 60.98 RPKM in Vagina
Total median expression: 115.44 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -8.1065-0.125 Picture PostScript Text
3' UTR -331.961461-0.227 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009003 - Pept_cys/ser_Trypsin-like
IPR017329 - Pept_S1A_HAT/DESC1
IPR018114 - Peptidase_S1/S6_AS
IPR001254 - Peptidase_S1_S6
IPR001314 - Peptidase_S1A
IPR000082 - SEA

Pfam Domains:
PF00089 - Trypsin
PF01390 - SEA domain
PF09342 - Domain of unknown function (DUF1986)
PF13365 - Trypsin-like peptidase domain

SCOP Domains:
50494 - Trypsin-like serine proteases
82671 - SEA domain

ModBase Predicted Comparative 3D Structure on O60235
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004252 serine-type endopeptidase activity
GO:0008233 peptidase activity
GO:0008236 serine-type peptidase activity
GO:0016787 hydrolase activity

Biological Process:
GO:0006508 proteolysis
GO:0007585 respiratory gaseous exchange

Cellular Component:
GO:0005576 extracellular region
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC033295 - Homo sapiens transmembrane protease, serine 11D, mRNA (cDNA clone IMAGE:4751691).
AK094054 - Homo sapiens cDNA FLJ36735 fis, clone UTERU2012976, highly similar to Homo sapiens mRNA for airway trypsin-like protease.
BC125195 - Homo sapiens transmembrane protease, serine 11D, mRNA (cDNA clone MGC:150587 IMAGE:40123006), complete cds.
BC125196 - Homo sapiens transmembrane protease, serine 11D, mRNA (cDNA clone MGC:150588 IMAGE:40123011), complete cds.
AK296853 - Homo sapiens cDNA FLJ57391 complete cds, highly similar to Transmembrane protease, serine 11D precursor (EC 3.4.21.-).
E11120 - cDNA 901 bp coding a part of trypsin-like enzyme.
E11126 - cDNA sequence of trypsin-like enzyme gene.
AB002134 - Homo sapiens mRNA for airway trypsin-like protease, complete cds.
AK290289 - Homo sapiens cDNA FLJ76243 complete cds, highly similar to Homo sapiens airway trypsin-like protease (HAT), mRNA.
E11125 - cDNA 789 bp in plasmid p5-119 for trypsin-like enzyme.
E11115 - DNA sequence of cDNA 59 bp coding N-terminus of trypsin-like enzyme.

-  Other Names for This Gene
  Alternate Gene Symbols: HAT, NM_004262, NP_004253, O60235, Q08AF6, TM11D_HUMAN
UCSC ID: uc003hdq.3
RefSeq Accession: NM_004262
Protein: O60235 (aka TM11D_HUMAN)
CCDS: CCDS3518.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_004262.2
exon count: 10CDS single in 3' UTR: no RNA size: 2800
ORF size: 1257CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2714.00frame shift in genome: no % Coverage: 99.39
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.