Human Gene LL22NC03-63E9.3 (uc011ais.3)

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Human Gene LL22NC03-63E9.3 (uc011ais.3)

Description: Homo sapiens uncharacterized LL22NC03-63E9.3 (LL22NC03-63E9.3), non-coding RNA.
Transcript (Including UTRs)
Position: hg19 chr22:22,901,756-22,909,007 Size: 7,252 Total Exon Count: 3 Strand: +
Coding Region
Position: hg19 chr22:22,901,775-22,906,221 Size: 4,447 Coding Exon Count: 3

Page Index	Sequence and Links	UniProtKB Comments	Primers	Gene Alleles	RNA-Seq Expression
Microarray Expression	RNA Structure	Protein Structure	Other Species	mRNA Descriptions	Other Names
Model Information	Methods

Data last updated at UCSC: 2013-06-14

Sequence and Links to Tools and Databases

Genomic Sequence (chr22:22,901,756-22,909,007)			mRNA (may differ from genome)		Protein (99 aa)
Gene Sorter	Genome Browser	Other Species FASTA	Table Schema	AlphaFold	BioGPS
Ensembl	ExonPrimer	GeneCards	Lynx	MGI	PubMed
UniProtKB

Comments and Description Text from UniProtKB


	ID: B5MCX5_HUMAN DESCRIPTION: SubName: Full=Uncharacterized protein; CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Common Gene Haplotype Alleles


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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


	Highest median expression: 0.82 RPKM in Testis Total median expression: 0.85 RPKM View in GTEx track of Genome Browser View at GTEx portal View GTEx Body Map

Microarray Expression Data


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mRNA Secondary Structure of 3' and 5' UTRs

Region	Fold Energy	Bases	Energy/Base	Display As
5' UTR	-5.00	19	-0.263	Picture	PostScript	Text
3' UTR	-1011.55	2786	-0.363	Picture	PostScript	Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

Protein Domain and Structure Information

ModBase Predicted Comparative 3D Structure on B5MCX5


Front	Top	Side

The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog

Descriptions from all associated GenBank mRNAs


	MN287441 - Homo sapiens IGH + IGL c545_light_IGLV1-47_IGLJ3 mRNA, partial cds, alternatively spliced. MN279166 - Homo sapiens IGL c2726_light_IGLV2-23_IGLJ1 mRNA, partial cds. BC040190 - Homo sapiens cDNA clone IMAGE:4813925. JD411902 - Sequence 392926 from Patent EP1572962. JD074563 - Sequence 55587 from Patent EP1572962. JD473866 - Sequence 454890 from Patent EP1572962. JD136107 - Sequence 117131 from Patent EP1572962. JD243166 - Sequence 224190 from Patent EP1572962. JD457007 - Sequence 438031 from Patent EP1572962. JD117500 - Sequence 98524 from Patent EP1572962. MN290418 - Homo sapiens IG c1018_light_IGLV2-14_IGLJ1 mRNA, partial cds.

Other Names for This Gene


	Alternate Gene Symbols: B5MCX5, B5MCX5_HUMAN, LOC648691, NR_027426, uc011ais.2 UCSC ID: uc011ais.3 RefSeq Accession: NR_027426 Protein: B5MCX5

Gene Model Information

category:	coding	nonsense-mediated-decay:	no	RNA accession:	NR_027426.1
exon count:	3	CDS single in 3' UTR:	no	RNA size:	3105
ORF size:	300	CDS single in intron:	no	Alignment % ID:	100.00
txCdsPredict score:	764.00	frame shift in genome:	no	% Coverage:	100.00
has start codon:	yes	stop codon in genome:	no	# of Alignments:	1
has end codon:	yes	retained intron:	no	# AT/AC introns	0
selenocysteine:	no	end bleed into intron:	0	# strange splices:	0

Click here for a detailed description of the fields of the table above.

Methods, Credits, and Use Restrictions


	Click here for details on how this gene model was made and data restrictions if any.