Human Gene PLAC1 (uc004exo.1)
  Description: Homo sapiens placenta-specific 1 (PLAC1), mRNA.
Transcript (Including UTRs)
   Position: hg19 chrX:133,699,873-133,792,513 Size: 92,641 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chrX:133,700,074-133,700,712 Size: 639 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:133,699,873-133,792,513)mRNA (may differ from genome)Protein (212 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
H-INVHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedTreefamUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PLAC1_HUMAN
DESCRIPTION: RecName: Full=Placenta-specific protein 1; Flags: Precursor;
FUNCTION: May play a role in placental development.
SUBCELLULAR LOCATION: Secreted (Probable).
TISSUE SPECIFICITY: Expressed in placenta. Localizes primarily to differentiated syncytiotrophoblast throughout gestation as well as to a small population of villous cytotrophoblasts. Also detected in maternal blood and rapidly disappears following delivery, but is not detected in other adult or fetal tissues examined.
INDUCTION: Up-regulated during trophoblast differentiation and by FGF7 in trophoblast cells.
SIMILARITY: Belongs to the PLAC1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PLAC1
Diseases sorted by gene-association score: preeclampsia/eclampsia 1 (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.75 RPKM in Testis
Total median expression: 1.33 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -77.10286-0.270 Picture PostScript Text
3' UTR -41.04201-0.204 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q9HBJ0
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function

Biological Process:
GO:0001890 placenta development
GO:0007275 multicellular organism development

Cellular Component:
GO:0005575 cellular_component
GO:0005576 extracellular region


-  Descriptions from all associated GenBank mRNAs
  AF234654 - Homo sapiens PLAC1 (PLAC1) mRNA, complete cds.
AK075086 - Homo sapiens cDNA FLJ90605 fis, clone PLACE1001536, highly similar to Placenta-specific 1.
BC022335 - Homo sapiens placenta-specific 1, mRNA (cDNA clone MGC:22788 IMAGE:4769552), complete cds.
BC066327 - Homo sapiens placenta-specific 1, mRNA (cDNA clone MGC:87275 IMAGE:30339131), complete cds.
JD154276 - Sequence 135300 from Patent EP1572962.
CU692566 - Synthetic construct Homo sapiens gateway clone IMAGE:100022119 5' read PLAC1 mRNA.
KJ893126 - Synthetic construct Homo sapiens clone ccsbBroadEn_02520 PLAC1 gene, encodes complete protein.
DQ891386 - Synthetic construct clone IMAGE:100004016; FLH176428.01X; RZPDo839D02122D placenta-specific 1 (PLAC1) gene, encodes complete protein.
DQ894562 - Synthetic construct Homo sapiens clone IMAGE:100009022; FLH176424.01L; RZPDo839D02121D placenta-specific 1 (PLAC1) gene, encodes complete protein.
JD033963 - Sequence 14987 from Patent EP1572962.
JD025964 - Sequence 6988 from Patent EP1572962.
JD034480 - Sequence 15504 from Patent EP1572962.
JD021484 - Sequence 2508 from Patent EP1572962.
JD137470 - Sequence 118494 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_021796, NP_068568, PLAC1_HUMAN, Q9HBJ0
UCSC ID: uc004exo.1
RefSeq Accession: NM_021796
Protein: Q9HBJ0 (aka PLAC1_HUMAN)
CCDS: CCDS14642.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_021796.3
exon count: 3CDS single in 3' UTR: no RNA size: 1126
ORF size: 639CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1460.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.