Human Gene FASTKD3 (uc003jeb.3)
  Description: Homo sapiens FAST kinase domains 3 (FASTKD3), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA.
RefSeq Summary (NM_024091): This gene encodes a member of a small family of Fas-activated serine/threonine kinase domain (FASTKD) containing proteins that share an amino terminal mitochondrial targeting domain and multiple carboxy terminal FAST domains as well as a putative RNA-binding RAP domain. The members of this family are ubiquitously expressed and are generally most abundant in mitochondria-enriched tissues such as heart, skeletal muscle and brown-adipose tissue. Some members of this protein family may play a role in apoptosis. The protein encoded by this gene interacts with components of the mitochondrial respiratory and translation networks. A pseudogene of this gene is also present on chromosome 5. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2013].
Transcript (Including UTRs)
   Position: hg19 chr5:7,859,272-7,869,150 Size: 9,879 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr5:7,859,548-7,868,196 Size: 8,649 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:7,859,272-7,869,150)mRNA (may differ from genome)Protein (662 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
neXtProtOMIMPubMedTreefamUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FAKD3_HUMAN
DESCRIPTION: RecName: Full=FAST kinase domain-containing protein 3;
SIMILARITY: Belongs to the FAST kinase family.
SIMILARITY: Contains 1 RAP domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): FASTKD3
CDC HuGE Published Literature: FASTKD3

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.80 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 138.18 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -46.10172-0.268 Picture PostScript Text
3' UTR -49.90276-0.181 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013579 - FAST_2
IPR010622 - FAST_Leu-rich
IPR013584 - RAP

Pfam Domains:
PF06743 - FAST kinase-like protein, subdomain 1
PF08368 - FAST kinase-like protein, subdomain 2
PF08373 - RAP domain

ModBase Predicted Comparative 3D Structure on Q14CZ7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
 Protein SequenceProtein Sequence   
 AlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0004672 protein kinase activity
GO:0005515 protein binding

Biological Process:
GO:0006468 protein phosphorylation
GO:0033617 mitochondrial respiratory chain complex IV assembly
GO:0044528 regulation of mitochondrial mRNA stability
GO:0045333 cellular respiration
GO:0070131 positive regulation of mitochondrial translation

Cellular Component:
GO:0005634 nucleus
GO:0005739 mitochondrion


-  Descriptions from all associated GenBank mRNAs
  BC001295 - Homo sapiens FAST kinase domains 3, mRNA (cDNA clone IMAGE:3453776), partial cds.
AK026927 - Homo sapiens cDNA: FLJ23274 fis, clone HEP02623, highly similar to AF161354 Homo sapiens HSPC091 mRNA.
AF161354 - Homo sapiens HSPC091 mRNA, partial cds.
BC143518 - Homo sapiens cDNA clone IMAGE:9052027.
BC143517 - Homo sapiens cDNA clone IMAGE:9052026.
BC113563 - Homo sapiens hypothetical protein MGC5297, mRNA (cDNA clone MGC:142123 IMAGE:8322615), complete cds.
HQ258333 - Synthetic construct Homo sapiens clone IMAGE:100072642 FAST kinase domains 3 (FASTKD3) gene, encodes complete protein.
KJ899524 - Synthetic construct Homo sapiens clone ccsbBroadEn_08918 FASTKD3 gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: FAKD3_HUMAN, NM_024091, NP_076996, Q14CZ7, Q9BVD3
UCSC ID: uc003jeb.3
RefSeq Accession: NM_024091
Protein: Q14CZ7 (aka FAKD3_HUMAN)
CCDS: CCDS3873.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_024091.3
exon count: 7CDS single in 3' UTR: no RNA size: 2451
ORF size: 1989CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 4061.00frame shift in genome: no % Coverage: 99.43
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.