Human Gene URM1 (uc011may.2)
Description: Homo sapiens ubiquitin related modifier 1 (URM1), transcript variant 2, mRNA.
Transcript (Including UTRs)
Position: hg19 chr9:131,133,598-131,154,295 Size: 20,698 Total Exon Count: 4 Strand: +
Coding Region
Position: hg19 chr9:131,133,660-131,151,792 Size: 18,133 Coding Exon Count: 4
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF09138 - Urm1 (Ubiquitin related modifier)
ModBase Predicted Comparative 3D Structure on Q9BTM9-2
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
BC003581 - Homo sapiens ubiquitin related modifier 1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:2668 IMAGE:3546655), complete cds.AK001880 - Homo sapiens cDNA FLJ11018 fis, clone PLACE1003602, highly similar to Homo sapiens mRNA expressed in placenta.AK097029 - Homo sapiens cDNA FLJ39710 fis, clone SMINT2013031.AK300877 - Homo sapiens cDNA FLJ58948 complete cds.BC011620 - Homo sapiens chromosome 9 open reading frame 74, mRNA (cDNA clone IMAGE:3959055), partial cds.KJ894850 - Synthetic construct Homo sapiens clone ccsbBroadEn_04244 URM1 gene, encodes complete protein.KJ906339 - Synthetic construct Homo sapiens clone ccsbBroadEn_16009 URM1 gene, encodes complete protein.D83200 - Homo sapiens mRNA expressed in placenta.JD020633 - Sequence 1657 from Patent EP1572962.JD020634 - Sequence 1658 from Patent EP1572962.JD020635 - Sequence 1659 from Patent EP1572962.JD035195 - Sequence 16219 from Patent EP1572962.JD035196 - Sequence 16220 from Patent EP1572962.JD028963 - Sequence 9987 from Patent EP1572962.JD023742 - Sequence 4766 from Patent EP1572962.JD023743 - Sequence 4767 from Patent EP1572962.JD025891 - Sequence 6915 from Patent EP1572962.JD033452 - Sequence 14476 from Patent EP1572962.JD035654 - Sequence 16678 from Patent EP1572962.JD556603 - Sequence 537627 from Patent EP1572962.JD226511 - Sequence 207535 from Patent EP1572962.JD501919 - Sequence 482943 from Patent EP1572962.JD469030 - Sequence 450054 from Patent EP1572962.JD170302 - Sequence 151326 from Patent EP1572962.JD461376 - Sequence 442400 from Patent EP1572962.JD383139 - Sequence 364163 from Patent EP1572962.JD020600 - Sequence 1624 from Patent EP1572962.JD023520 - Sequence 4544 from Patent EP1572962.JD033621 - Sequence 14645 from Patent EP1572962.JD495484 - Sequence 476508 from Patent EP1572962.JD195320 - Sequence 176344 from Patent EP1572962.JD129804 - Sequence 110828 from Patent EP1572962.JD140718 - Sequence 121742 from Patent EP1572962.JD076315 - Sequence 57339 from Patent EP1572962.JD387023 - Sequence 368047 from Patent EP1572962.JD174626 - Sequence 155650 from Patent EP1572962.JD136472 - Sequence 117496 from Patent EP1572962.JD099123 - Sequence 80147 from Patent EP1572962.JD097570 - Sequence 78594 from Patent EP1572962.JD394173 - Sequence 375197 from Patent EP1572962.JD415838 - Sequence 396862 from Patent EP1572962.JD250463 - Sequence 231487 from Patent EP1572962.JD485760 - Sequence 466784 from Patent EP1572962.JD552776 - Sequence 533800 from Patent EP1572962.JD460570 - Sequence 441594 from Patent EP1572962.JD255035 - Sequence 236059 from Patent EP1572962.JD339265 - Sequence 320289 from Patent EP1572962.JD021325 - Sequence 2349 from Patent EP1572962.JD035352 - Sequence 16376 from Patent EP1572962.
Biochemical and Signaling Pathways
Other Names for This Gene
Alternate Gene Symbols: C9orf74, NM_001135947, NP_001129419, Q9BTM9-2, uc011may.1UCSC ID: uc011may.2RefSeq Accession: NM_001135947
Protein: Q9BTM9-2 , splice isoform of Q9BTM9
CCDS: CCDS48035.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_001135947.2
exon count:
4 CDS single in 3' UTR:
no
RNA size:
3006
ORF size:
441 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
965.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
yes
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.