Human Gene NCKAP1 (uc002upb.4)
Description: Homo sapiens NCK-associated protein 1 (NCKAP1), transcript variant 2, mRNA.
Transcript (Including UTRs)
Position: hg19 chr2:183,789,579-183,903,586 Size: 114,008 Total Exon Count: 32 Strand: -
Coding Region
Position: hg19 chr2:183,790,430-183,902,827 Size: 112,398 Coding Exon Count: 32
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
MalaCards Disease Associations
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
Press "+" in the title bar above to open this section.
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
Press "+" in the title bar above to open this section.
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF09735 - Membrane-associated apoptosis protein
ModBase Predicted Comparative 3D Structure on Q9Y2A7-2
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
LF205738 - JP 2014500723-A/13241: Polycomb-Associated Non-Coding RNAs.AB011159 - Homo sapiens KIAA0587 mRNA for KIAA0587 protein.BC015025 - Homo sapiens NCK-associated protein 1, mRNA (cDNA clone MGC:8981 IMAGE:3907646), complete cds.AB014509 - Homo sapiens mRNA for Nck-associated protein 1 (Nap1), complete cds.AK292914 - Homo sapiens cDNA FLJ78656 complete cds, highly similar to Homo sapiens NCK-associated protein 1 (NCKAP1), transcript variant 1, mRNA.BT007033 - Homo sapiens NCK-associated protein 1 mRNA, complete cds.AB383914 - Synthetic construct DNA, clone: pF1KSDA0587, Homo sapiens NCKAP1 gene for NCK-associated protein 1, complete cds, without stop codon, in Flexi system.DQ893545 - Synthetic construct clone IMAGE:100006175; FLH164594.01X; RZPDo839H11162D NCK-associated protein 1 (NCKAP1) gene, encodes complete protein.DQ893809 - Synthetic construct Homo sapiens clone IMAGE:100008269; FLH164590.01L; RZPDo839H11161D NCK-associated protein 1 (NCKAP1) gene, encodes complete protein.MA441315 - JP 2018138019-A/13241: Polycomb-Associated Non-Coding RNAs.AK001291 - Homo sapiens cDNA FLJ10429 fis, clone NT2RP1000413, highly similar to Nck-associated protein 1.JD551595 - Sequence 532619 from Patent EP1572962.JD093839 - Sequence 74863 from Patent EP1572962.JD145454 - Sequence 126478 from Patent EP1572962.JD090799 - Sequence 71823 from Patent EP1572962.LF347641 - JP 2014500723-A/155144: Polycomb-Associated Non-Coding RNAs.JD297207 - Sequence 278231 from Patent EP1572962.JD262932 - Sequence 243956 from Patent EP1572962.AK002153 - Homo sapiens cDNA FLJ11291 fis, clone PLACE1009659, highly similar to Nck-associated protein 1.LF347643 - JP 2014500723-A/155146: Polycomb-Associated Non-Coding RNAs.LF347649 - JP 2014500723-A/155152: Polycomb-Associated Non-Coding RNAs.LF347650 - JP 2014500723-A/155153: Polycomb-Associated Non-Coding RNAs.LF347654 - JP 2014500723-A/155157: Polycomb-Associated Non-Coding RNAs.LF347655 - JP 2014500723-A/155158: Polycomb-Associated Non-Coding RNAs.LF347656 - JP 2014500723-A/155159: Polycomb-Associated Non-Coding RNAs.LF347659 - JP 2014500723-A/155162: Polycomb-Associated Non-Coding RNAs.LF347661 - JP 2014500723-A/155164: Polycomb-Associated Non-Coding RNAs.LF347662 - JP 2014500723-A/155165: Polycomb-Associated Non-Coding RNAs.LF347663 - JP 2014500723-A/155166: Polycomb-Associated Non-Coding RNAs.LF347669 - JP 2014500723-A/155172: Polycomb-Associated Non-Coding RNAs.MA583218 - JP 2018138019-A/155144: Polycomb-Associated Non-Coding RNAs.MA583220 - JP 2018138019-A/155146: Polycomb-Associated Non-Coding RNAs.MA583226 - JP 2018138019-A/155152: Polycomb-Associated Non-Coding RNAs.MA583227 - JP 2018138019-A/155153: Polycomb-Associated Non-Coding RNAs.MA583231 - JP 2018138019-A/155157: Polycomb-Associated Non-Coding RNAs.MA583232 - JP 2018138019-A/155158: Polycomb-Associated Non-Coding RNAs.MA583233 - JP 2018138019-A/155159: Polycomb-Associated Non-Coding RNAs.MA583236 - JP 2018138019-A/155162: Polycomb-Associated Non-Coding RNAs.MA583238 - JP 2018138019-A/155164: Polycomb-Associated Non-Coding RNAs.MA583239 - JP 2018138019-A/155165: Polycomb-Associated Non-Coding RNAs.MA583240 - JP 2018138019-A/155166: Polycomb-Associated Non-Coding RNAs.MA583246 - JP 2018138019-A/155172: Polycomb-Associated Non-Coding RNAs.LF347671 - JP 2014500723-A/155174: Polycomb-Associated Non-Coding RNAs.JD407282 - Sequence 388306 from Patent EP1572962.JD075741 - Sequence 56765 from Patent EP1572962.JD523490 - Sequence 504514 from Patent EP1572962.LF347672 - JP 2014500723-A/155175: Polycomb-Associated Non-Coding RNAs.JD227681 - Sequence 208705 from Patent EP1572962.JD485615 - Sequence 466639 from Patent EP1572962.JD271292 - Sequence 252316 from Patent EP1572962.JD458514 - Sequence 439538 from Patent EP1572962.JD056228 - Sequence 37252 from Patent EP1572962.JD458513 - Sequence 439537 from Patent EP1572962.JD056229 - Sequence 37253 from Patent EP1572962.JD458511 - Sequence 439535 from Patent EP1572962.JD458512 - Sequence 439536 from Patent EP1572962.JD271291 - Sequence 252315 from Patent EP1572962.JD458510 - Sequence 439534 from Patent EP1572962.JD406055 - Sequence 387079 from Patent EP1572962.JD406801 - Sequence 387825 from Patent EP1572962.JD461601 - Sequence 442625 from Patent EP1572962.JD057274 - Sequence 38298 from Patent EP1572962.MA583248 - JP 2018138019-A/155174: Polycomb-Associated Non-Coding RNAs.MA583249 - JP 2018138019-A/155175: Polycomb-Associated Non-Coding RNAs.
Biochemical and Signaling Pathways
Other Names for This Gene
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_205842.2
exon count:
32 CDS single in 3' UTR:
no
RNA size:
5015
ORF size:
3405 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
6836.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
Click here
for a detailed description of the fields of the table above.
Methods, Credits, and Use Restrictions
Click here
for details on how this gene model was made and data restrictions if any.