Human Gene CAMSAP2 (uc001gvk.3)
  Description: Homo sapiens calmodulin regulated spectrin-associated protein family, member 2 (CAMSAP2), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr1:200,708,686-200,829,831 Size: 121,146 Total Exon Count: 17 Strand: +
Coding Region
   Position: hg19 chr1:200,708,956-200,827,187 Size: 118,232 Coding Exon Count: 17 

Page IndexSequence and LinksPrimersCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:200,708,686-200,829,831)mRNA (may differ from genome)Protein (1478 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
OMIMPubMedTreefamUniProtKBBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.48 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 438.82 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -145.30270-0.538 Picture PostScript Text
3' UTR -632.532644-0.239 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF08683 - Microtubule-binding calmodulin-regulated spectrin-associated
PF11971 - CAMSAP CH domain
PF17095 - Spectrin-binding region of Ca2+-Calmodulin

SCOP Domains:
47576 - Calponin-homology domain, CH-domain
50346 - PRC-barrel domain

ModBase Predicted Comparative 3D Structure on Q08AD1-3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK095640 - Homo sapiens cDNA FLJ38321 fis, clone FCBBF3024225, highly similar to Homo sapiens calmodulin regulated spectrin-associated protein 1-like 1 (CAMSAP1L1), mRNA.
LF383644 - JP 2014500723-A/191147: Polycomb-Associated Non-Coding RNAs.
LQ740467 - Sequence 21 from Patent WO2018083189.
BC125229 - Homo sapiens calmodulin regulated spectrin-associated protein 1-like 1, mRNA (cDNA clone MGC:150680 IMAGE:40124603), complete cds.
BC125230 - Homo sapiens calmodulin regulated spectrin-associated protein 1-like 1, mRNA (cDNA clone MGC:150681 IMAGE:40124604), complete cds.
AK126821 - Homo sapiens cDNA FLJ44873 fis, clone BRAMY2023939, highly similar to Homo sapiens calmodulin regulated spectrin-associated protein 1-like 1 (CAMSAP1L1), mRNA.
AB029001 - Homo sapiens mRNA for KIAA1078 protein, partial cds.
MA619221 - JP 2018138019-A/191147: Polycomb-Associated Non-Coding RNAs.
JD141457 - Sequence 122481 from Patent EP1572962.
JD131139 - Sequence 112163 from Patent EP1572962.
JC506674 - Sequence 42 from Patent EP2733220.
JC737786 - Sequence 42 from Patent WO2014075939.
JC506661 - Sequence 29 from Patent EP2733220.
JC506666 - Sequence 34 from Patent EP2733220.
JC737773 - Sequence 29 from Patent WO2014075939.
JC737778 - Sequence 34 from Patent WO2014075939.
JC506688 - Sequence 56 from Patent EP2733220.
JC737800 - Sequence 56 from Patent WO2014075939.
JD462611 - Sequence 443635 from Patent EP1572962.
JD532771 - Sequence 513795 from Patent EP1572962.
JD552179 - Sequence 533203 from Patent EP1572962.
JD339823 - Sequence 320847 from Patent EP1572962.
LF319722 - JP 2014500723-A/127225: Polycomb-Associated Non-Coding RNAs.
LF319721 - JP 2014500723-A/127224: Polycomb-Associated Non-Coding RNAs.
LF319717 - JP 2014500723-A/127220: Polycomb-Associated Non-Coding RNAs.
MA555299 - JP 2018138019-A/127225: Polycomb-Associated Non-Coding RNAs.
MA555298 - JP 2018138019-A/127224: Polycomb-Associated Non-Coding RNAs.
MA555294 - JP 2018138019-A/127220: Polycomb-Associated Non-Coding RNAs.
BC056910 - Homo sapiens calmodulin regulated spectrin-associated protein 1-like 1, mRNA (cDNA clone IMAGE:6172242), partial cds.
BC065508 - Homo sapiens calmodulin regulated spectrin-associated protein 1-like 1, mRNA (cDNA clone IMAGE:5557229).
LF319714 - JP 2014500723-A/127217: Polycomb-Associated Non-Coding RNAs.
LF319713 - JP 2014500723-A/127216: Polycomb-Associated Non-Coding RNAs.
LF319712 - JP 2014500723-A/127215: Polycomb-Associated Non-Coding RNAs.
BC029449 - Homo sapiens calmodulin regulated spectrin-associated protein 1-like 1, mRNA (cDNA clone IMAGE:4719604).
LF319711 - JP 2014500723-A/127214: Polycomb-Associated Non-Coding RNAs.
LF319710 - JP 2014500723-A/127213: Polycomb-Associated Non-Coding RNAs.
LF319709 - JP 2014500723-A/127212: Polycomb-Associated Non-Coding RNAs.
LF319708 - JP 2014500723-A/127211: Polycomb-Associated Non-Coding RNAs.
LF319707 - JP 2014500723-A/127210: Polycomb-Associated Non-Coding RNAs.
LF319706 - JP 2014500723-A/127209: Polycomb-Associated Non-Coding RNAs.
AF087998 - Homo sapiens full length insert cDNA clone YX44B06.
BC011385 - Homo sapiens calmodulin regulated spectrin-associated protein 1-like 1, mRNA (cDNA clone IMAGE:3870900), partial cds.
LF319704 - JP 2014500723-A/127207: Polycomb-Associated Non-Coding RNAs.
AL110158 - Homo sapiens mRNA; cDNA DKFZp586F0424 (from clone DKFZp586F0424).
LF205366 - JP 2014500723-A/12869: Polycomb-Associated Non-Coding RNAs.
LF319703 - JP 2014500723-A/127206: Polycomb-Associated Non-Coding RNAs.
LF319702 - JP 2014500723-A/127205: Polycomb-Associated Non-Coding RNAs.
JD346099 - Sequence 327123 from Patent EP1572962.
BC045721 - Homo sapiens cDNA clone IMAGE:4798894.
JD305693 - Sequence 286717 from Patent EP1572962.
JD291964 - Sequence 272988 from Patent EP1572962.
JD182913 - Sequence 163937 from Patent EP1572962.
LF319701 - JP 2014500723-A/127204: Polycomb-Associated Non-Coding RNAs.
JD285611 - Sequence 266635 from Patent EP1572962.
AK026348 - Homo sapiens cDNA: FLJ22695 fis, clone HSI11686.
JD280068 - Sequence 261092 from Patent EP1572962.
JD284047 - Sequence 265071 from Patent EP1572962.
JD359223 - Sequence 340247 from Patent EP1572962.
LF319700 - JP 2014500723-A/127203: Polycomb-Associated Non-Coding RNAs.
LF319699 - JP 2014500723-A/127202: Polycomb-Associated Non-Coding RNAs.
JD448558 - Sequence 429582 from Patent EP1572962.
JD164354 - Sequence 145378 from Patent EP1572962.
JD502353 - Sequence 483377 from Patent EP1572962.
JD348469 - Sequence 329493 from Patent EP1572962.
JD257983 - Sequence 239007 from Patent EP1572962.
JD269372 - Sequence 250396 from Patent EP1572962.
JD022760 - Sequence 3784 from Patent EP1572962.
JD028681 - Sequence 9705 from Patent EP1572962.
JD378899 - Sequence 359923 from Patent EP1572962.
JD313549 - Sequence 294573 from Patent EP1572962.
MA555291 - JP 2018138019-A/127217: Polycomb-Associated Non-Coding RNAs.
MA555290 - JP 2018138019-A/127216: Polycomb-Associated Non-Coding RNAs.
MA555289 - JP 2018138019-A/127215: Polycomb-Associated Non-Coding RNAs.
MA555288 - JP 2018138019-A/127214: Polycomb-Associated Non-Coding RNAs.
MA555287 - JP 2018138019-A/127213: Polycomb-Associated Non-Coding RNAs.
MA555286 - JP 2018138019-A/127212: Polycomb-Associated Non-Coding RNAs.
MA555285 - JP 2018138019-A/127211: Polycomb-Associated Non-Coding RNAs.
MA555284 - JP 2018138019-A/127210: Polycomb-Associated Non-Coding RNAs.
MA555283 - JP 2018138019-A/127209: Polycomb-Associated Non-Coding RNAs.
MA555281 - JP 2018138019-A/127207: Polycomb-Associated Non-Coding RNAs.
MA440943 - JP 2018138019-A/12869: Polycomb-Associated Non-Coding RNAs.
MA555280 - JP 2018138019-A/127206: Polycomb-Associated Non-Coding RNAs.
MA555279 - JP 2018138019-A/127205: Polycomb-Associated Non-Coding RNAs.
MA555278 - JP 2018138019-A/127204: Polycomb-Associated Non-Coding RNAs.
MA555277 - JP 2018138019-A/127203: Polycomb-Associated Non-Coding RNAs.
MA555276 - JP 2018138019-A/127202: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: CAMSAP1L1, KIAA1078, NM_203459, NP_982284, Q08AD1-3
UCSC ID: uc001gvk.3
RefSeq Accession: NM_203459
Protein: Q08AD1-3, splice isoform of Q08AD1 CCDS: CCDS1404.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_203459.1
exon count: 17CDS single in 3' UTR: no RNA size: 7359
ORF size: 4437CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 9023.00frame shift in genome: no % Coverage: 99.89
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.