Human Gene CDK16 (uc011mll.2)
  Description: Homo sapiens cyclin-dependent kinase 16 (CDK16), transcript variant 3, mRNA.
RefSeq Summary (NM_001170460): The protein encoded by this gene belongs to the cdc2/cdkx subfamily of the ser/thr family of protein kinases. It may play a role in signal transduction cascades in terminally differentiated cells; in exocytosis; and in transport of secretory cargo from the endoplasmic reticulum. This gene is thought to escape X inactivation. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Dec 2009].
Transcript (Including UTRs)
   Position: hg19 chrX:47,082,417-47,089,394 Size: 6,978 Total Exon Count: 16 Strand: +
Coding Region
   Position: hg19 chrX:47,082,495-47,088,167 Size: 5,673 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:47,082,417-47,089,394)mRNA (may differ from genome)Protein (570 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsH-INV
HGNCLynxMGIOMIMPubMedTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: J3KN74_HUMAN
DESCRIPTION: SubName: Full=Cyclin-dependent kinase 16;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • C006253 pirinixic acid
  • D015655 1-Methyl-4-phenylpyridinium
  • C016403 2,4-dinitrotoluene
  • C023514 2,6-dinitrotoluene
  • C085911 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one
  • C019499 2-nitrofluorene
  • C017906 3-dinitrobenzene
  • C009505 4,4'-diaminodiphenylmethane
  • C016583 4-(N-methyl-N-nitrosamino)-1-(3-pyridyl)-1-butanone
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 65.63 RPKM in Brain - Cerebellum
Total median expression: 1146.88 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -24.2078-0.310 Picture PostScript Text
3' UTR -501.591227-0.409 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine kinase
PF14531 - Kinase-like

SCOP Domains:
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on J3KN74
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
 Protein SequenceProtein Sequence   
 AlignmentAlignment   

-  Descriptions from all associated GenBank mRNAs
  BC001048 - Homo sapiens PCTAIRE protein kinase 1, mRNA (cDNA clone MGC:1330 IMAGE:3504276), complete cds.
BC015607 - Homo sapiens PCTAIRE protein kinase 1, mRNA (cDNA clone MGC:23461 IMAGE:4762081), complete cds.
AK096881 - Homo sapiens cDNA FLJ39562 fis, clone SKMUS2000931, highly similar to SERINE/THREONINE-PROTEIN KINASE PCTAIRE-1 (EC 2.7.1.-).
AK303849 - Homo sapiens cDNA FLJ56198 complete cds, highly similar to Serine/threonine-protein kinase PCTAIRE-1 (EC 2.7.11.22).
BC006190 - Homo sapiens PCTAIRE protein kinase 1, mRNA (cDNA clone MGC:10347 IMAGE:3830397), complete cds.
HM005637 - Homo sapiens clone HTL-S-224n testis secretory sperm-binding protein Li 224n mRNA, complete cds.
AK290145 - Homo sapiens cDNA FLJ75610 complete cds, highly similar to Homo sapiens PCTAIRE protein kinase 1 (PCTK1), transcript variant 1, mRNA.
AK296880 - Homo sapiens cDNA FLJ60122 complete cds, highly similar to Serine/threonine-protein kinase PCTAIRE-1 (EC 2.7.11.22).
X66363 - H.sapiens mRNA PCTAIRE-1 for serine/threonine protein kinase.
AK131486 - Homo sapiens cDNA FLJ16665 fis, clone THYMU2031249, highly similar to SERINE/THREONINE-PROTEIN KINASE PCTAIRE-1 (EC 2.7.1.-).
AK301832 - Homo sapiens cDNA FLJ55502 complete cds, highly similar to Serine/threonine-protein kinase PCTAIRE-1 (EC 2.7.11.22).
AB209465 - Homo sapiens premature mRNA for hypothetical protein FLJ16665 variant.
AB464003 - Synthetic construct DNA, clone: pF1KB8165, Homo sapiens PCTK1 gene for PCTAIRE protein kinase 1, without stop codon, in Flexi system.
CU674528 - Synthetic construct Homo sapiens gateway clone IMAGE:100018350 5' read PCTK1 mRNA.
CU675289 - Synthetic construct Homo sapiens gateway clone IMAGE:100017292 5' read PCTK1 mRNA.
KJ891761 - Synthetic construct Homo sapiens clone ccsbBroadEn_01155 CDK16 gene, encodes complete protein.
KJ897304 - Synthetic construct Homo sapiens clone ccsbBroadEn_06698 CDK16 gene, encodes complete protein.
KJ901628 - Synthetic construct Homo sapiens clone ccsbBroadEn_11022 CDK16 gene, encodes complete protein.
KJ905247 - Synthetic construct Homo sapiens clone ccsbBroadEn_14730 CDK16 gene, encodes complete protein.
BT006827 - Homo sapiens PCTAIRE protein kinase 1 mRNA, complete cds.
BC009852 - Homo sapiens PCTAIRE protein kinase 1, mRNA (cDNA clone IMAGE:3632161), partial cds.
JD387249 - Sequence 368273 from Patent EP1572962.
JD120777 - Sequence 101801 from Patent EP1572962.
JD086873 - Sequence 67897 from Patent EP1572962.
JD422509 - Sequence 403533 from Patent EP1572962.
JD459464 - Sequence 440488 from Patent EP1572962.
JD287380 - Sequence 268404 from Patent EP1572962.
JD456761 - Sequence 437785 from Patent EP1572962.
JD400165 - Sequence 381189 from Patent EP1572962.
JD560810 - Sequence 541834 from Patent EP1572962.
JD338254 - Sequence 319278 from Patent EP1572962.
JD287566 - Sequence 268590 from Patent EP1572962.
JD247853 - Sequence 228877 from Patent EP1572962.
JD239551 - Sequence 220575 from Patent EP1572962.
JD190972 - Sequence 171996 from Patent EP1572962.
JD537630 - Sequence 518654 from Patent EP1572962.
JD225951 - Sequence 206975 from Patent EP1572962.
JD491501 - Sequence 472525 from Patent EP1572962.
JD534107 - Sequence 515131 from Patent EP1572962.
JD387684 - Sequence 368708 from Patent EP1572962.
JD520979 - Sequence 502003 from Patent EP1572962.
JD325796 - Sequence 306820 from Patent EP1572962.
JD521562 - Sequence 502586 from Patent EP1572962.
JD402556 - Sequence 383580 from Patent EP1572962.
JD524876 - Sequence 505900 from Patent EP1572962.
JD387374 - Sequence 368398 from Patent EP1572962.
JD439175 - Sequence 420199 from Patent EP1572962.
JD514318 - Sequence 495342 from Patent EP1572962.
JD122199 - Sequence 103223 from Patent EP1572962.
JD131107 - Sequence 112131 from Patent EP1572962.
JD279464 - Sequence 260488 from Patent EP1572962.
JD555479 - Sequence 536503 from Patent EP1572962.
JD544609 - Sequence 525633 from Patent EP1572962.
JD221116 - Sequence 202140 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: J3KN74, J3KN74_HUMAN, NM_001170460, NP_006192
UCSC ID: uc011mll.2
RefSeq Accession: NM_001170460
Protein: J3KN74 CCDS: CCDS55408.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001170460.1
exon count: 16CDS single in 3' UTR: no RNA size: 3034
ORF size: 1713CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3202.00frame shift in genome: no % Coverage: 99.47
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.