Human Gene RP11-142C4.6 (uc001nng.1)
  Description: Homo sapiens uncharacterized RP11-142C4.6 (RP11-142C4.6), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr11:58,701,116-58,825,925 Size: 124,810 Total Exon Count: 6 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:58,701,116-58,825,925)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerH-INVLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.66 RPKM in Prostate
Total median expression: 3.31 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK091446 - Homo sapiens cDNA FLJ34127 fis, clone FCBBF3010124.
AX746988 - Sequence 513 from Patent EP1308459.
JD095889 - Sequence 76913 from Patent EP1572962.
JD364865 - Sequence 345889 from Patent EP1572962.
JD504613 - Sequence 485637 from Patent EP1572962.
JD107246 - Sequence 88270 from Patent EP1572962.
JD109531 - Sequence 90555 from Patent EP1572962.
JD060082 - Sequence 41106 from Patent EP1572962.
JD242561 - Sequence 223585 from Patent EP1572962.
JD523998 - Sequence 505022 from Patent EP1572962.
JD558081 - Sequence 539105 from Patent EP1572962.
JD384398 - Sequence 365422 from Patent EP1572962.
JD109752 - Sequence 90776 from Patent EP1572962.
JD334939 - Sequence 315963 from Patent EP1572962.
JD310074 - Sequence 291098 from Patent EP1572962.
JD333824 - Sequence 314848 from Patent EP1572962.
JD187184 - Sequence 168208 from Patent EP1572962.
JD115826 - Sequence 96850 from Patent EP1572962.
JD212324 - Sequence 193348 from Patent EP1572962.
JD296782 - Sequence 277806 from Patent EP1572962.
JD122312 - Sequence 103336 from Patent EP1572962.
JD118839 - Sequence 99863 from Patent EP1572962.
JD439210 - Sequence 420234 from Patent EP1572962.
JD148193 - Sequence 129217 from Patent EP1572962.
JD273424 - Sequence 254448 from Patent EP1572962.
JD400261 - Sequence 381285 from Patent EP1572962.
JD039642 - Sequence 20666 from Patent EP1572962.
JD297957 - Sequence 278981 from Patent EP1572962.
JD315836 - Sequence 296860 from Patent EP1572962.
JD499019 - Sequence 480043 from Patent EP1572962.
JD419207 - Sequence 400231 from Patent EP1572962.
JD068273 - Sequence 49297 from Patent EP1572962.
JD353631 - Sequence 334655 from Patent EP1572962.
JD349042 - Sequence 330066 from Patent EP1572962.
JD512131 - Sequence 493155 from Patent EP1572962.
JD485289 - Sequence 466313 from Patent EP1572962.
JD292483 - Sequence 273507 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: LOC283194, NR_033853
UCSC ID: uc001nng.1
RefSeq Accession: NR_033853

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_033853.1
exon count: 6CDS single in 3' UTR: no RNA size: 2603
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 530.50frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.