Human Gene RPL7L1 (uc003osq.1)
Description: Homo sapiens ribosomal protein L7-like 1 (RPL7L1), mRNA.
Transcript (Including UTRs)
Position: hg19 chr6:42,847,671-42,854,731 Size: 7,061 Total Exon Count: 6 Strand: +
Coding Region
Position: hg19 chr6:42,847,676-42,854,202 Size: 6,527 Coding Exon Count: 6
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: RL7L_HUMAN
DESCRIPTION: RecName: Full=60S ribosomal protein L7-like 1;
INTERACTION: P49407:ARRB1; NbExp=1; IntAct=EBI-1052408, EBI-743313; P32121:ARRB2; NbExp=1; IntAct=EBI-1052408, EBI-714559;SIMILARITY: Belongs to the ribosomal protein L30P family.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR018038 - Ribosomal_L30_CS
IPR016082 - Ribosomal_L30_ferredoxin-like
IPR012988 - Ribosomal_L30_N
IPR005998 - Ribosomal_L7_euk
Pfam Domains: PF00327 - Ribosomal protein L30p/L7e
PF08079 - Ribosomal L30 N-terminal domain
SCOP Domains: 55129 - Ribosomal protein L30p/L7e
ModBase Predicted Comparative 3D Structure on Q6DKI1
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
BC064519 - Homo sapiens ribosomal protein L7-like 1, mRNA (cDNA clone IMAGE:5574226), partial cds.BC036861 - Homo sapiens ribosomal protein L7-like 1, mRNA (cDNA clone IMAGE:5115021), containing frame-shift errors.AK291310 - Homo sapiens cDNA FLJ77818 complete cds.AK299816 - Homo sapiens cDNA FLJ50850 complete cds, highly similar to Ribosomal protein L7-like 1.AK091341 - Homo sapiens cDNA FLJ34022 fis, clone FCBBF2002953.AK297324 - Homo sapiens cDNA FLJ51993 complete cds, highly similar to Ribosomal protein L7-like 1.AK291949 - Homo sapiens cDNA FLJ76625 complete cds, highly similar to Homo sapiens ribosomal protein L7-like 1 (RPL7L1), mRNA.BC058020 - Homo sapiens ribosomal protein L7-like 1, mRNA (cDNA clone MGC:62004 IMAGE:6736635), complete cds.AK021904 - Homo sapiens cDNA FLJ11842 fis, clone HEMBA1006652, highly similar to Ribosomal protein L7-like 1.BC073890 - Homo sapiens ribosomal protein L7-like 1, mRNA (cDNA clone MGC:90362 IMAGE:5491531), complete cds.LF385200 - JP 2014500723-A/192703: Polycomb-Associated Non-Coding RNAs.EU832458 - Synthetic construct Homo sapiens clone HAIB:100067487; DKFZo008B0629 ribosomal protein L7-like 1 protein (RPL7L1) gene, encodes complete protein.CU687268 - Synthetic construct Homo sapiens gateway clone IMAGE:100022755 5' read RPL7L1 mRNA.HQ447443 - Synthetic construct Homo sapiens clone IMAGE:100070771; CCSB014347_01 ribosomal protein L7-like 1 (RPL7L1) gene, encodes complete protein.KJ896015 - Synthetic construct Homo sapiens clone ccsbBroadEn_05409 RPL7L1 gene, encodes complete protein.EU832540 - Synthetic construct Homo sapiens clone HAIB:100067569; DKFZo004B0630 ribosomal protein L7-like 1 protein (RPL7L1) gene, encodes complete protein.JD085293 - Sequence 66317 from Patent EP1572962.JD019359 - Sequence 383 from Patent EP1572962.JD032590 - Sequence 13614 from Patent EP1572962.DQ583593 - Homo sapiens piRNA piR-50705, complete sequence.DQ573947 - Homo sapiens piRNA piR-42059, complete sequence.JD221598 - Sequence 202622 from Patent EP1572962.JD278474 - Sequence 259498 from Patent EP1572962.JD265637 - Sequence 246661 from Patent EP1572962.JD291948 - Sequence 272972 from Patent EP1572962.JD447439 - Sequence 428463 from Patent EP1572962.JD092736 - Sequence 73760 from Patent EP1572962.JD545412 - Sequence 526436 from Patent EP1572962.JD504289 - Sequence 485313 from Patent EP1572962.JD208953 - Sequence 189977 from Patent EP1572962.JD076468 - Sequence 57492 from Patent EP1572962.JD548096 - Sequence 529120 from Patent EP1572962.JD376725 - Sequence 357749 from Patent EP1572962.JD417586 - Sequence 398610 from Patent EP1572962.JD417587 - Sequence 398611 from Patent EP1572962.JD417588 - Sequence 398612 from Patent EP1572962.JD289575 - Sequence 270599 from Patent EP1572962.JD411821 - Sequence 392845 from Patent EP1572962.JD411822 - Sequence 392846 from Patent EP1572962.JD196471 - Sequence 177495 from Patent EP1572962.JD144138 - Sequence 125162 from Patent EP1572962.JD495947 - Sequence 476971 from Patent EP1572962.JD532504 - Sequence 513528 from Patent EP1572962.JD136159 - Sequence 117183 from Patent EP1572962.JD079525 - Sequence 60549 from Patent EP1572962.JD487482 - Sequence 468506 from Patent EP1572962.JD065891 - Sequence 46915 from Patent EP1572962.JD180068 - Sequence 161092 from Patent EP1572962.JD196829 - Sequence 177853 from Patent EP1572962.JD179044 - Sequence 160068 from Patent EP1572962.JD074823 - Sequence 55847 from Patent EP1572962.JD179045 - Sequence 160069 from Patent EP1572962.JD361165 - Sequence 342189 from Patent EP1572962.JD333770 - Sequence 314794 from Patent EP1572962.JD183875 - Sequence 164899 from Patent EP1572962.JD092046 - Sequence 73070 from Patent EP1572962.JD292439 - Sequence 273463 from Patent EP1572962.JD534478 - Sequence 515502 from Patent EP1572962.JD451670 - Sequence 432694 from Patent EP1572962.JD364935 - Sequence 345959 from Patent EP1572962.JD461402 - Sequence 442426 from Patent EP1572962.JD405409 - Sequence 386433 from Patent EP1572962.JD185466 - Sequence 166490 from Patent EP1572962.MA620777 - JP 2018138019-A/192703: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: A8K7D4, NM_198486, NP_940888, Q5TFZ5, Q6DKI1, Q6PEK3, RL7L_HUMANUCSC ID: uc003osq.1RefSeq Accession: NM_198486
Protein: Q6DKI1
(aka RL7L_HUMAN)
CCDS: CCDS4873.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_198486.2
exon count:
6 CDS single in 3' UTR:
no
RNA size:
1293
ORF size:
741 CDS single in intron:
no
Alignment % ID:
99.92
txCdsPredict score:
1676.00 frame shift in genome:
no
% Coverage:
98.61
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
523 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.