Human Gene BC132797 (uc003njg.1)
  Description: Homo sapiens cDNA FLJ35314 fis, clone PROST2010606.
Transcript (Including UTRs)
   Position: hg19 chr6:27,356,538-27,357,613 Size: 1,076 Total Exon Count: 1 Strand: +
Coding Region
   Position: hg19 chr6:27,356,634-27,357,242 Size: 609 Coding Exon Count: 1 

Page IndexSequence and LinksPrimersGene AllelesMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:27,356,538-27,357,613)mRNA (may differ from genome)Protein (202 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaExonPrimerGeneCards
MGIPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -29.4096-0.306 Picture PostScript Text
3' UTR -134.10371-0.361 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK092633 - Homo sapiens cDNA FLJ35314 fis, clone PROST2010606.
AX747641 - Sequence 1166 from Patent EP1308459.
AK294965 - Homo sapiens cDNA FLJ60252 complete cds, moderately similar to Zinc finger protein 135.
BC132797 - Homo sapiens cDNA clone IMAGE:40146819.
JD452282 - Sequence 433306 from Patent EP1572962.
JD238533 - Sequence 219557 from Patent EP1572962.

-  Other Names for This Gene
  UCSC ID: uc003njg.1
Representative RNA: BC132797

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC132797.1
exon count: 1CDS single in 3' UTR: no RNA size: 938
ORF size: 609CDS single in intron: no Alignment % ID: 99.79
txCdsPredict score: 1179.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.