Human Gene WBSCR16 (uc010lck.3)
  Description: Homo sapiens Williams-Beuren syndrome chromosome region 16 (WBSCR16), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr7:74,765,876-74,789,332 Size: 23,457 Total Exon Count: 8 Strand: +
Coding Region
   Position: hg19 chr7:74,765,964-74,789,274 Size: 23,311 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:74,765,876-74,789,332)mRNA (may differ from genome)Protein (267 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
EnsemblEntrez GeneExonPrimerGeneCardsH-INVHGNC
HPRDLynxMGIneXtProtPubMedUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: WBS16_HUMAN
DESCRIPTION: RecName: Full=Williams-Beuren syndrome chromosomal region 16 protein; AltName: Full=RCC1-like G exchanging factor-like protein;
TISSUE SPECIFICITY: Ubiquitous.
DISEASE: Note=WBSCR16 is located in the Williams-Beuren syndrome (WBS) critical region. WBS results from a hemizygous deletion of several genes on chromosome 7q11.23, thought to arise as a consequence of unequal crossing over between highly homologous low-copy repeat sequences flanking the deleted region. Haploinsufficiency of WBSCR16 may be the cause of certain cardiovascular and musculo-skeletal abnormalities observed in the disease.
SIMILARITY: Contains 6 RCC1 repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.36 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 112.79 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -14.6088-0.166 Picture PostScript Text
3' UTR -17.2058-0.297 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000408 - Reg_chr_condens
IPR009091 - Reg_csome_cond/b-lactamase_inh

Pfam Domains:
PF00415 - Regulator of chromosome condensation (RCC1) repeat
PF13540 - Regulator of chromosome condensation (RCC1) repeat

SCOP Domains:
50985 - RCC1/BLIP-II

ModBase Predicted Comparative 3D Structure on Q96I51
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding

Biological Process:
GO:0008150 biological_process

Cellular Component:
GO:0005575 cellular_component


-  Descriptions from all associated GenBank mRNAs
  BC157844 - Homo sapiens Williams-Beuren syndrome chromosome region 16, mRNA (cDNA clone MGC:189739 IMAGE:9057063), complete cds.
JD396514 - Sequence 377538 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC157844, D3DXK0, NM_030798, NP_110425, Q548B1, Q96I51, Q9H0G7, WBS16_HUMAN
UCSC ID: uc010lck.3
Representative RNA: BC157844
Protein: Q96I51 (aka WBS16_HUMAN or WS16_HUMAN)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC157844.1
exon count: 8CDS single in 3' UTR: no RNA size: 950
ORF size: 804CDS single in intron: no Alignment % ID: 99.89
txCdsPredict score: 1723.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 2
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.