Human Gene KLK10 (uc002pva.3)
  Description: Homo sapiens kallikrein-related peptidase 10 (KLK10), transcript variant 3, mRNA.
RefSeq Summary (NM_001077500): Kallikreins are a subgroup of serine proteases having diverse physiological functions. Growing evidence suggests that many kallikreins are implicated in carcinogenesis and some have potential as novel cancer and other disease biomarkers. This gene is one of the fifteen kallikrein subfamily members located in a cluster on chromosome 19. Its encoded protein is secreted and may play a role in suppression of tumorigenesis in breast and prostate cancers. Alternate splicing of this gene results in multiple transcript variants encoding the same protein. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr19:51,516,000-51,523,431 Size: 7,432 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr19:51,518,056-51,522,386 Size: 4,331 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:51,516,000-51,523,431)mRNA (may differ from genome)Protein (276 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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H-INVHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedTreefamUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KLK10_HUMAN
DESCRIPTION: RecName: Full=Kallikrein-10; EC=3.4.21.-; AltName: Full=Normal epithelial cell-specific 1; AltName: Full=Protease serine-like 1; Flags: Precursor;
FUNCTION: Has a tumor-suppressor role for NES1 in breast and prostate cancer.
SUBCELLULAR LOCATION: Secreted (Probable).
TISSUE SPECIFICITY: Expressed in breast, ovary and prostate.
DEVELOPMENTAL STAGE: Down-regulated during breast cancer progression.
SIMILARITY: Belongs to the peptidase S1 family. Kallikrein subfamily.
SIMILARITY: Contains 1 peptidase S1 domain.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/KLK10ID41076ch19q13.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): KLK10
CDC HuGE Published Literature: KLK10

-  MalaCards Disease Associations
  MalaCards Gene Search: KLK10
Diseases sorted by gene-association score: ovarian cancer, somatic (3), breast cancer (2), prostate cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 101.49 RPKM in Esophagus - Mucosa
Total median expression: 206.61 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -19.60120-0.163 Picture PostScript Text
3' UTR -677.902056-0.330 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009003 - Pept_cys/ser_Trypsin-like
IPR018114 - Peptidase_S1/S6_AS
IPR001254 - Peptidase_S1_S6
IPR001314 - Peptidase_S1A

Pfam Domains:
PF00089 - Trypsin

SCOP Domains:
50494 - Trypsin-like serine proteases

ModBase Predicted Comparative 3D Structure on O43240
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004252 serine-type endopeptidase activity
GO:0008233 peptidase activity
GO:0008236 serine-type peptidase activity
GO:0016787 hydrolase activity

Biological Process:
GO:0006508 proteolysis
GO:0007049 cell cycle

Cellular Component:
GO:0005576 extracellular region


-  Descriptions from all associated GenBank mRNAs
  AK026045 - Homo sapiens cDNA: FLJ22392 fis, clone HRC07868.
JD186537 - Sequence 167561 from Patent EP1572962.
KY303930 - Homo sapiens nonfunctional kallikrein-related peptidase 10 transcript variant 4 (KLK10) mRNA, partial sequence; alternatively spliced.
KY303931 - Homo sapiens kallikrein-related peptidase 10 transcript variant 5 (KLK10) mRNA, complete cds; alternatively spliced.
KY303932 - Homo sapiens nonfunctional kallikrein-related peptidase 10 transcript variant 6 (KLK10) mRNA, partial sequence; alternatively spliced.
KY303933 - Homo sapiens nonfunctional kallikrein-related peptidase 10 transcript variant 7 (KLK10) mRNA, partial sequence; alternatively spliced.
KY303934 - Homo sapiens nonfunctional kallikrein-related peptidase 10 transcript variant 8 (KLK10) mRNA, partial sequence; alternatively spliced.
KY303935 - Homo sapiens nonfunctional kallikrein-related peptidase 10 transcript variant 9 (KLK10) mRNA, partial sequence; alternatively spliced.
KY303936 - Homo sapiens nonfunctional kallikrein-related peptidase 10 transcript variant 10 (KLK10) mRNA, partial sequence; alternatively spliced.
KY303937 - Homo sapiens nonfunctional kallikrein-related peptidase 10 transcript variant 11 (KLK10) mRNA, partial sequence; alternatively spliced.
AF024605 - Homo sapiens serine protease-like protease (nes1) mRNA, complete cds.
AY561635 - Homo sapiens kallikrein 10 (KLK10) mRNA, complete cds.
JD280091 - Sequence 261115 from Patent EP1572962.
BC002710 - Homo sapiens kallikrein-related peptidase 10, mRNA (cDNA clone MGC:3667 IMAGE:3632557), complete cds.
JD114265 - Sequence 95289 from Patent EP1572962.
JD473241 - Sequence 454265 from Patent EP1572962.
JD555640 - Sequence 536664 from Patent EP1572962.
JD409445 - Sequence 390469 from Patent EP1572962.
AK309456 - Homo sapiens cDNA, FLJ99497.
JD069420 - Sequence 50444 from Patent EP1572962.
JD372525 - Sequence 353549 from Patent EP1572962.
JD121868 - Sequence 102892 from Patent EP1572962.
JD360552 - Sequence 341576 from Patent EP1572962.
AK292365 - Homo sapiens cDNA FLJ76060 complete cds, highly similar to Homo sapiens kallikrein 10 (KLK10), transcript variant 1, mRNA.
KJ897394 - Synthetic construct Homo sapiens clone ccsbBroadEn_06788 KLK10 gene, encodes complete protein.
DQ890750 - Synthetic construct clone IMAGE:100003380; FLH165664.01X; RZPDo839F02160D kallikrein 10 (KLK10) gene, encodes complete protein.
DQ893917 - Synthetic construct Homo sapiens clone IMAGE:100008377; FLH165661.01L; RZPDo839F02159D kallikrein 10 (KLK10) gene, encodes complete protein.
CR450327 - Homo sapiens full open reading frame cDNA clone RZPDo834H011D for gene KLK10, kallikrein 10; complete cds; without stopcodon.
KJ010195 - Homo sapiens clone SEM7 kallikrein 10 protein 13 (KLK10) mRNA, partial cds.
KJ010199 - Homo sapiens clone SEN4 kallikrein 10 protein 4 (KLK10) mRNA, partial cds.
KJ010201 - Homo sapiens clone SEN6 kallikrein 10 protein 6-like (KLK10) mRNA, partial sequence.
KJ010190 - Homo sapiens clone SEM1 kallikrein 10 protein 8 (KLK10) mRNA, partial cds.
KJ010191 - Homo sapiens clone SEM2 kallikrein 10 protein 9 (KLK10) mRNA, partial cds.
KJ010192 - Homo sapiens clone SEM4 kallikrein 10 protein 10-like (KLK10) mRNA, partial sequence.
KJ010193 - Homo sapiens clone SEM5 kallikrein 10 protein 11-like (KLK10) mRNA, partial sequence.
KJ010194 - Homo sapiens clone SEM6 kallikrein 10 protein 12 (KLK10) mRNA, partial cds.
KJ010196 - Homo sapiens clone SEN1 kallikrein 10 protein 1 (KLK10) mRNA, partial cds.
KJ010197 - Homo sapiens clone SEN2 kallikrein 10 protein 2 (KLK10) mRNA, partial cds.
KJ010198 - Homo sapiens clone SEN3 kallikrein 10 protein 3 (KLK10) mRNA, partial cds.
KJ010202 - Homo sapiens clone SEN7 kallikrein 10 protein 7 (KLK10) mRNA, partial cds.
KJ010200 - Homo sapiens clone SEN5 kallikrein 10 protein 5 (KLK10) mRNA, partial cds.
JD407196 - Sequence 388220 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NC12, KLK10_HUMAN, NES1, NM_001077500, NP_665895, O43240, PRSSL1, Q53YL3, Q99920, Q9GZW9
UCSC ID: uc002pva.3
RefSeq Accession: NM_001077500
Protein: O43240 (aka KLK10_HUMAN or KLKA_HUMAN)
CCDS: CCDS12817.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001077500.1
exon count: 6CDS single in 3' UTR: no RNA size: 3024
ORF size: 831CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1774.00frame shift in genome: no % Coverage: 99.44
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.