Human Gene ERGIC3 (uc002xcs.3)
Description: Homo sapiens ERGIC and golgi 3 (ERGIC3), transcript variant 1, mRNA.
Transcript (Including UTRs)
Position: hg19 chr20:34,129,778-34,145,405 Size: 15,628 Total Exon Count: 14 Strand: +
Coding Region
Position: hg19 chr20:34,129,847-34,145,275 Size: 15,429 Coding Exon Count: 14
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF07970 - Endoplasmic reticulum vesicle transporter
PF13850 - Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
ModBase Predicted Comparative 3D Structure on Q9Y282-3
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
LF205980 - JP 2014500723-A/13483: Polycomb-Associated Non-Coding RNAs.AF308298 - Homo sapiens serologically defined breast cancer antigen NY-BR-84 mRNA, partial cds.AF077030 - Homo sapiens hypothetical 43.2 Kd protein mRNA, complete cds.AF151812 - Homo sapiens CGI-54 protein mRNA, complete cds.EF206690 - Homo sapiens endoplasmic reticulum-localized protein ERp43 mRNA, complete cds.BC014014 - Homo sapiens ERGIC and golgi 3, mRNA (cDNA clone MGC:19896 IMAGE:3954269), complete cds.JD127258 - Sequence 108282 from Patent EP1572962.AK074550 - Homo sapiens cDNA FLJ90069 fis, clone HEMBA1003945, highly similar to Serologically defined breast cancer antigen 84.BC009765 - Homo sapiens ERGIC and golgi 3, mRNA (cDNA clone MGC:13325 IMAGE:4283844), complete cds.AK096484 - Homo sapiens cDNA FLJ39165 fis, clone OCBBF2002663.AK300916 - Homo sapiens cDNA FLJ56701 complete cds, highly similar to Endoplasmic reticulum-Golgi intermediate compartment protein 3.LF350336 - JP 2014500723-A/157839: Polycomb-Associated Non-Coding RNAs.CU679479 - Synthetic construct Homo sapiens gateway clone IMAGE:100023404 5' read ERGIC3 mRNA.CU680742 - Synthetic construct Homo sapiens gateway clone IMAGE:100017143 5' read ERGIC3 mRNA.HQ448277 - Synthetic construct Homo sapiens clone IMAGE:100071680; CCSB007079_02 ERGIC and golgi 3 (ERGIC3) gene, encodes complete protein.KJ893951 - Synthetic construct Homo sapiens clone ccsbBroadEn_03345 ERGIC3 gene, encodes complete protein.KJ898933 - Synthetic construct Homo sapiens clone ccsbBroadEn_08327 ERGIC3 gene, encodes complete protein.AF091085 - Homo sapiens clone 638 unknown mRNA, complete sequence.AF116614 - Homo sapiens PRO0989 mRNA, complete cds.LF350337 - JP 2014500723-A/157840: Polycomb-Associated Non-Coding RNAs.DQ591872 - Homo sapiens piRNA piR-58984, complete sequence.LF350338 - JP 2014500723-A/157841: Polycomb-Associated Non-Coding RNAs.AL161963 - Homo sapiens mRNA; cDNA DKFZp547A2190 (from clone DKFZp547A2190).LF350339 - JP 2014500723-A/157842: Polycomb-Associated Non-Coding RNAs.LF350340 - JP 2014500723-A/157843: Polycomb-Associated Non-Coding RNAs.LF350344 - JP 2014500723-A/157847: Polycomb-Associated Non-Coding RNAs.LF350345 - JP 2014500723-A/157848: Polycomb-Associated Non-Coding RNAs.LF350346 - JP 2014500723-A/157849: Polycomb-Associated Non-Coding RNAs.JD164062 - Sequence 145086 from Patent EP1572962.JD228513 - Sequence 209537 from Patent EP1572962.JD295930 - Sequence 276954 from Patent EP1572962.JD123698 - Sequence 104722 from Patent EP1572962.LF350347 - JP 2014500723-A/157850: Polycomb-Associated Non-Coding RNAs.JD105219 - Sequence 86243 from Patent EP1572962.JD070757 - Sequence 51781 from Patent EP1572962.JD193369 - Sequence 174393 from Patent EP1572962.MA585913 - JP 2018138019-A/157839: Polycomb-Associated Non-Coding RNAs.MA585914 - JP 2018138019-A/157840: Polycomb-Associated Non-Coding RNAs.MA585915 - JP 2018138019-A/157841: Polycomb-Associated Non-Coding RNAs.MA585916 - JP 2018138019-A/157842: Polycomb-Associated Non-Coding RNAs.MA585917 - JP 2018138019-A/157843: Polycomb-Associated Non-Coding RNAs.MA585921 - JP 2018138019-A/157847: Polycomb-Associated Non-Coding RNAs.MA585922 - JP 2018138019-A/157848: Polycomb-Associated Non-Coding RNAs.MA585923 - JP 2018138019-A/157849: Polycomb-Associated Non-Coding RNAs.MA585924 - JP 2018138019-A/157850: Polycomb-Associated Non-Coding RNAs.MA441557 - JP 2018138019-A/13483: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_198398.1
exon count:
14 CDS single in 3' UTR:
no
RNA size:
1383
ORF size:
1167 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
2534.00 frame shift in genome:
no
% Coverage:
98.77
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.