Human Gene C16orf55 (uc031qxo.1) Description and Page Index
  Description: Homo sapiens chromosome 16 open reading frame 55 (C16orf55), transcript variant 5, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr16:89,724,212-89,736,866 Size: 12,655 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr16:89,724,320-89,735,703 Size: 11,384 Coding Exon Count: 3 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:89,724,212-89,736,866)mRNA (may differ from genome)Protein (72 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsH-INVHGNC
LynxMGIOMIMPubMedStanford SOURCEUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 42.23 RPKM in Testis
Total median expression: 117.52 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -55.90108-0.518 Picture PostScript Text
3' UTR -506.511163-0.436 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on B4DZN8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC160108 - Synthetic construct Homo sapiens clone IMAGE:100064140, MGC:193223 chromosome 16 open reading frame 55 (C16orf55) mRNA, encodes complete protein.
BC148299 - Homo sapiens chromosome 16 open reading frame 55, mRNA (cDNA clone MGC:171207 IMAGE:40112476), complete cds.
AK056168 - Homo sapiens cDNA FLJ31606 fis, clone NT2RI2002802.
AK128803 - Homo sapiens cDNA FLJ45788 fis, clone NHNPC2001108.
AK303024 - Homo sapiens cDNA FLJ50739 complete cds.
BC045670 - Homo sapiens chromosome 16 open reading frame 55, mRNA (cDNA clone IMAGE:5298665), partial cds.
AK125673 - Homo sapiens cDNA FLJ43685 fis, clone TBAES2001553.
JD474112 - Sequence 455136 from Patent EP1572962.
JD391320 - Sequence 372344 from Patent EP1572962.
JD402675 - Sequence 383699 from Patent EP1572962.
JD391322 - Sequence 372346 from Patent EP1572962.
JD391319 - Sequence 372343 from Patent EP1572962.
JD375829 - Sequence 356853 from Patent EP1572962.
JD396803 - Sequence 377827 from Patent EP1572962.
JD391320 - Sequence 372344 from Patent EP1572962.
JD375833 - Sequence 356857 from Patent EP1572962.
JD375832 - Sequence 356856 from Patent EP1572962.
JD115786 - Sequence 96810 from Patent EP1572962.
JD391314 - Sequence 372338 from Patent EP1572962.
JD391320 - Sequence 372344 from Patent EP1572962.
JD375831 - Sequence 356855 from Patent EP1572962.
JD406032 - Sequence 387056 from Patent EP1572962.
JD391323 - Sequence 372347 from Patent EP1572962.
JD375870 - Sequence 356894 from Patent EP1572962.
JD391322 - Sequence 372346 from Patent EP1572962.
JD391329 - Sequence 372353 from Patent EP1572962.
JD396803 - Sequence 377827 from Patent EP1572962.
JD375829 - Sequence 356853 from Patent EP1572962.
JD391321 - Sequence 372345 from Patent EP1572962.
JD149764 - Sequence 130788 from Patent EP1572962.
JD375837 - Sequence 356861 from Patent EP1572962.
JD391320 - Sequence 372344 from Patent EP1572962.
JD375832 - Sequence 356856 from Patent EP1572962.
JD375833 - Sequence 356857 from Patent EP1572962.
JD565840 - Sequence 546864 from Patent EP1572962.
JD243035 - Sequence 224059 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B4DZN8, B4DZN8_HUMAN, NM_001271910, NP_001258839, uc010vpk.1
UCSC ID: uc031qxo.1
RefSeq Accession: NM_001271910
Protein: B4DZN8

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001271910.1
exon count: 3CDS single in 3' UTR: no RNA size: 1506
ORF size: 219CDS single in intron: no Alignment % ID: 99.93
txCdsPredict score: 638.00frame shift in genome: no % Coverage: 98.94
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.