Human Gene CHRAC1 (uc022bbv.1) Description and Page Index
  Description: Homo sapiens chromatin accessibility complex 1 (CHRAC1), transcript variant 3, non-coding RNA.
RefSeq Summary (NR_040712): CHRAC1 is a histone-fold protein that interacts with other histone-fold proteins to bind DNA in a sequence-independent manner. These histone-fold protein dimers combine within larger enzymatic complexes for DNA transcription, replication, and packaging.[supplied by OMIM, Apr 2004].
Transcript (Including UTRs)
   Position: hg19 chr8:141,522,081-141,527,252 Size: 5,172 Total Exon Count: 3 Strand: +


Page IndexSequence and LinksGenetic AssociationsCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:141,522,081-141,527,252)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerH-INV
HGNCLynxOMIMPubMedStanford SOURCETreefam

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): CHRAC1
CDC HuGE Published Literature: CHRAC1
Positive Disease Associations: Lipids , Triglycerides
Related Studies:
  1. Lipids
    , , . [PubMed 0]
  2. Triglycerides
    , , . [PubMed 0]

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.68 RPKM in Artery - Tibial
Total median expression: 354.33 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK023537 - Homo sapiens cDNA FLJ13475 fis, clone PLACE1003605.
AK308709 - Homo sapiens cDNA, FLJ98750.
BC015891 - Homo sapiens chromatin accessibility complex 1, mRNA (cDNA clone MGC:16846 IMAGE:3908717), complete cds.
AB463498 - Synthetic construct DNA, clone: pF1KB3422, Homo sapiens CHRAC1 gene for chromatin accessibility complex 1, without stop codon, in Flexi system.
DQ895620 - Synthetic construct Homo sapiens clone IMAGE:100010080; FLH186066.01L; RZPDo839A0861D chromatin accessibility complex 1 (CHRAC1) gene, encodes complete protein.
EU176214 - Synthetic construct Homo sapiens clone IMAGE:100006617; FLH264076.01X; RZPDo839A11257D chromatin accessibility complex 1 (CHRAC1) gene, encodes complete protein.
KJ894011 - Synthetic construct Homo sapiens clone ccsbBroadEn_03405 CHRAC1 gene, encodes complete protein.
AF226076 - Homo sapiens CHRAC15 (CHRAC15) mRNA, complete cds.
AK311595 - Homo sapiens cDNA, FLJ18637.
JD496296 - Sequence 477320 from Patent EP1572962.
JD298051 - Sequence 279075 from Patent EP1572962.
JD066007 - Sequence 47031 from Patent EP1572962.
JD107098 - Sequence 88122 from Patent EP1572962.
JD458167 - Sequence 439191 from Patent EP1572962.
JD243985 - Sequence 225009 from Patent EP1572962.
JD509726 - Sequence 490750 from Patent EP1572962.
JD201966 - Sequence 182990 from Patent EP1572962.
JD195531 - Sequence 176555 from Patent EP1572962.
JD043024 - Sequence 24048 from Patent EP1572962.
JD333674 - Sequence 314698 from Patent EP1572962.
JD101503 - Sequence 82527 from Patent EP1572962.
JD324593 - Sequence 305617 from Patent EP1572962.
JD147943 - Sequence 128967 from Patent EP1572962.
JD109632 - Sequence 90656 from Patent EP1572962.
JD234206 - Sequence 215230 from Patent EP1572962.
JD293443 - Sequence 274467 from Patent EP1572962.
JD457522 - Sequence 438546 from Patent EP1572962.
JD268352 - Sequence 249376 from Patent EP1572962.
JD552360 - Sequence 533384 from Patent EP1572962.
JD507323 - Sequence 488347 from Patent EP1572962.
JD441731 - Sequence 422755 from Patent EP1572962.
JD329803 - Sequence 310827 from Patent EP1572962.
JD329804 - Sequence 310828 from Patent EP1572962.
JD108207 - Sequence 89231 from Patent EP1572962.
JD245729 - Sequence 226753 from Patent EP1572962.
JD360626 - Sequence 341650 from Patent EP1572962.
JD410522 - Sequence 391546 from Patent EP1572962.
JD513893 - Sequence 494917 from Patent EP1572962.
JD460119 - Sequence 441143 from Patent EP1572962.
JD414732 - Sequence 395756 from Patent EP1572962.
JD120508 - Sequence 101532 from Patent EP1572962.
JD379593 - Sequence 360617 from Patent EP1572962.
JD379594 - Sequence 360618 from Patent EP1572962.
JD311577 - Sequence 292601 from Patent EP1572962.
JD113279 - Sequence 94303 from Patent EP1572962.
JD428098 - Sequence 409122 from Patent EP1572962.
JD185084 - Sequence 166108 from Patent EP1572962.
JD381712 - Sequence 362736 from Patent EP1572962.
JD512046 - Sequence 493070 from Patent EP1572962.
JD555137 - Sequence 536161 from Patent EP1572962.
JD119418 - Sequence 100442 from Patent EP1572962.
JD348046 - Sequence 329070 from Patent EP1572962.
JD228856 - Sequence 209880 from Patent EP1572962.
JD068311 - Sequence 49335 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_040712
UCSC ID: uc022bbv.1
RefSeq Accession: NR_040712

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: NR_040712.1
exon count: 3CDS single in 3' UTR: no RNA size: 2199
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 329.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.