Human Gene LINC00338 (uc021uds.1) Description and Page Index
  Description: Homo sapiens long intergenic non-protein coding RNA 338 (LINC00338), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr17:75,084,725-75,091,065 Size: 6,341 Total Exon Count: 3 Strand: +


Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:75,084,725-75,091,065)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerH-INVHGNCLynx
PubMedStanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.45 RPKM in Spleen
Total median expression: 238.51 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  FM995498 - Homo sapiens partial mRNA for SEC14L1 protein, transcript variant 9.
FM995497 - Homo sapiens partial mRNA for SEC14L1 protein, transcript variant 8.
FM995495 - Homo sapiens mRNA for SEC14L1 protein isoform b, transcript variant 6.
FM995496 - Homo sapiens mRNA for SEC14L1 protein isoform a, transcript variant 7.
FN357115 - Homo sapiens mRNA for hypothetical protein (C17orf86 gene), transcript variant 3.
FN357113 - Homo sapiens mRNA for hypothetical protein (C17orf86 gene), transcript variant 1.
FN357114 - Homo sapiens mRNA for hypothetical protein (C17orf86 gene), transcript variant 2.
FN357124 - Homo sapiens mRNA for hypothetical protein (C17orf86 gene), transcript variant 1.
FN357116 - Homo sapiens mRNA for hypothetical protein (C17orf86 gene), transcript variant 4.
BX648413 - Homo sapiens mRNA; cDNA DKFZp686L05235 (from clone DKFZp686L05235).
FN357117 - Homo sapiens mRNA for hypothetical protein (C17orf86 gene), transcript variant 5.
FN357118 - Homo sapiens mRNA for hypothetical protein (C17orf86 gene), transcript variant 6.
FN357119 - Homo sapiens mRNA for hypothetical protein (C17orf86 gene), transcript variant 7.
FN357120 - Homo sapiens mRNA for hypothetical protein (C17orf86 gene), transcript variant 8.
FN357121 - Homo sapiens mRNA for hypothetical protein (C17orf86 gene), transcript variant 9.
FN357125 - Homo sapiens mRNA for hypothetical protein (C17orf86 gene), transcript variant 9.
FN357122 - Homo sapiens mRNA for hypothetical protein (C17orf86 gene), transcript variant 10.
FN357123 - Homo sapiens mRNA for hypothetical protein (C17orf86 gene), transcript variant 11.
FN357126 - Homo sapiens mRNA for hypothetical protein (C17orf86 gene), transcript variant 10.
AF130050 - Homo sapiens clone FLB3442 PRO0872 mRNA, complete cds.
AK098448 - Homo sapiens cDNA FLJ25582 fis, clone JTH09579.
JD457505 - Sequence 438529 from Patent EP1572962.
JD321295 - Sequence 302319 from Patent EP1572962.
JD388933 - Sequence 369957 from Patent EP1572962.
JD147658 - Sequence 128682 from Patent EP1572962.
JD353110 - Sequence 334134 from Patent EP1572962.
JD353111 - Sequence 334135 from Patent EP1572962.
JD258835 - Sequence 239859 from Patent EP1572962.
JD152358 - Sequence 133382 from Patent EP1572962.
JD256855 - Sequence 237879 from Patent EP1572962.
JD213390 - Sequence 194414 from Patent EP1572962.
JD213391 - Sequence 194415 from Patent EP1572962.
JD463301 - Sequence 444325 from Patent EP1572962.
JD363208 - Sequence 344232 from Patent EP1572962.
JD352394 - Sequence 333418 from Patent EP1572962.
JD247460 - Sequence 228484 from Patent EP1572962.
JD247459 - Sequence 228483 from Patent EP1572962.
JD367233 - Sequence 348257 from Patent EP1572962.
JD367232 - Sequence 348256 from Patent EP1572962.
JD325924 - Sequence 306948 from Patent EP1572962.
JD527699 - Sequence 508723 from Patent EP1572962.
JD527702 - Sequence 508726 from Patent EP1572962.
JD514018 - Sequence 495042 from Patent EP1572962.
JD069843 - Sequence 50867 from Patent EP1572962.
JD069844 - Sequence 50868 from Patent EP1572962.
JD237101 - Sequence 218125 from Patent EP1572962.
JD415176 - Sequence 396200 from Patent EP1572962.
JD121096 - Sequence 102120 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: FN357119
UCSC ID: uc021uds.1
RefSeq Accession: NR_027058

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: FN357119.1
exon count: 3CDS single in 3' UTR: no RNA size: 1234
ORF size: 0CDS single in intron: no Alignment % ID: 99.76
txCdsPredict score: 550.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.