Human Gene FENDRR (uc021tmg.1) Description and Page Index
  Description: Homo sapiens FOXF1 adjacent non-coding developmental regulatory RNA (FENDRR), transcript variant 1, non-coding RNA.
RefSeq Summary (NR_033925): This gene produces a spliced long non-coding RNA transcribed bidirectionally with FOXF1 on the opposite strand. A similar gene in mouse is essential for normal development of the heart and body wall. The encoded transcript is thought to act by binding to polycomb repressive complex 2 (PRC2) and/or TrxG/MLL complexes to promote the methylation of the promoters of target genes, thus reducing their expression. It has been suggested that this transcript may play a role in the progression of gastric cancer. Alternatively spliced transcript variants have been identified. [provided by RefSeq, Mar 2015].
Transcript (Including UTRs)
   Position: hg19 chr16:86,508,131-86,542,466 Size: 34,336 Total Exon Count: 4 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:86,508,131-86,542,466)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerH-INVHGNCLynxOMIM
PubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 31.94 RPKM in Colon - Sigmoid
Total median expression: 167.01 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK091834 - Homo sapiens cDNA FLJ34515 fis, clone HLUNG2006614.
JD117052 - Sequence 98076 from Patent EP1572962.
JD443899 - Sequence 424923 from Patent EP1572962.
MK522493 - Homo sapiens FENDRR transcript variant 3 lncRNA, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_033925
UCSC ID: uc021tmg.1
RefSeq Accession: NR_033925

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_033925.1
exon count: 4CDS single in 3' UTR: no RNA size: 3099
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 537.50frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.