Human Gene ACSF3 (uc010cii.3) Description and Page Index
  Description: Homo sapiens acyl-CoA synthetase family member 3 (ACSF3), transcript variant 5, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr16:89,160,217-89,222,171 Size: 61,955 Total Exon Count: 11 Strand: +


Page IndexSequence and LinksGenetic AssociationsMalaCardsCTDRNA-Seq Expression
Microarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:89,160,217-89,222,171)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblExonPrimerH-INVHGNC
LynxPubMedStanford SOURCEWikipedia

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): ACSF3
CDC HuGE Published Literature: ACSF3
Positive Disease Associations: Hemoglobin A, Glycosylated
Related Studies:
  1. Hemoglobin A, Glycosylated
    Andrew D Paterson et al. Diabetes 2010, A genome-wide association study identifies a novel major locus for glycemic control in type 1 diabetes, as measured by both A1C and glucose., Diabetes. [PubMed 19875614]
    A major locus for A1C and glucose in individuals with diabetes is near SORCS1. This may influence the design and analysis of genetic studies attempting to identify risk factors for long-term diabetic complications.

-  MalaCards Disease Associations
  MalaCards Gene Search: ACSF3
Diseases sorted by gene-association score: combined malonic and methylmalonic aciduria* (1693)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.75 RPKM in Adrenal Gland
Total median expression: 179.85 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC028399 - Homo sapiens acyl-CoA synthetase family member 3, mRNA (cDNA clone MGC:33480 IMAGE:4812335), complete cds.
AK290963 - Homo sapiens cDNA FLJ77772 complete cds.
BC064609 - Homo sapiens acyl-CoA synthetase family member 3, mRNA (cDNA clone IMAGE:5548791), partial cds.
BC072391 - Homo sapiens acyl-CoA synthetase family member 3, mRNA (cDNA clone MGC:90152 IMAGE:5728307), complete cds.
AK075499 - Homo sapiens cDNA PSEC0197 fis, clone HEMBA1001490, weakly similar to PEROXISOMAL-COENZYME A SYNTHETASE (EC 6.-.-.-).
JD173333 - Sequence 154357 from Patent EP1572962.
JD117400 - Sequence 98424 from Patent EP1572962.
JD435760 - Sequence 416784 from Patent EP1572962.
JD554876 - Sequence 535900 from Patent EP1572962.
JD256485 - Sequence 237509 from Patent EP1572962.
KJ900400 - Synthetic construct Homo sapiens clone ccsbBroadEn_09794 ACSF3 gene, encodes complete protein.
JD373851 - Sequence 354875 from Patent EP1572962.
AK096561 - Homo sapiens cDNA FLJ39242 fis, clone OCBBF2008138.
JD205880 - Sequence 186904 from Patent EP1572962.
AK098113 - Homo sapiens cDNA FLJ40794 fis, clone TRACH2007676.
JD128713 - Sequence 109737 from Patent EP1572962.
JD444925 - Sequence 425949 from Patent EP1572962.
JD202667 - Sequence 183691 from Patent EP1572962.
JD057287 - Sequence 38311 from Patent EP1572962.
JD260650 - Sequence 241674 from Patent EP1572962.
JD064993 - Sequence 46017 from Patent EP1572962.
JD547946 - Sequence 528970 from Patent EP1572962.
JD473190 - Sequence 454214 from Patent EP1572962.
JD371073 - Sequence 352097 from Patent EP1572962.
JD533613 - Sequence 514637 from Patent EP1572962.
JD200701 - Sequence 181725 from Patent EP1572962.
JD432151 - Sequence 413175 from Patent EP1572962.
JD560198 - Sequence 541222 from Patent EP1572962.
JD141645 - Sequence 122669 from Patent EP1572962.
JD126787 - Sequence 107811 from Patent EP1572962.
JD513844 - Sequence 494868 from Patent EP1572962.
JD114159 - Sequence 95183 from Patent EP1572962.
JD345023 - Sequence 326047 from Patent EP1572962.
JD061492 - Sequence 42516 from Patent EP1572962.
JD475025 - Sequence 456049 from Patent EP1572962.
JD392912 - Sequence 373936 from Patent EP1572962.
JD064868 - Sequence 45892 from Patent EP1572962.
JD403179 - Sequence 384203 from Patent EP1572962.
JD225240 - Sequence 206264 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_045666, uc010cii.2
UCSC ID: uc010cii.3
RefSeq Accession: NR_045666

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: NR_045666.1
exon count: 11CDS single in 3' UTR: no RNA size: 3717
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2414.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.