Human Gene LINC00917 (uc010chr.2) Description and Page Index
  Description: Homo sapiens long intergenic non-protein coding RNA 917 (LINC00917), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr16:86,365,456-86,379,285 Size: 13,830 Total Exon Count: 6 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:86,365,456-86,379,285)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerGeneNetworkH-INVPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 87.80 RPKM in Testis
Total median expression: 87.94 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC043250 - Homo sapiens cDNA clone IMAGE:5296363.
AK093244 - Homo sapiens cDNA FLJ35925 fis, clone TESTI2010734.
AX748011 - Sequence 1536 from Patent EP1308459.
AL137562 - Homo sapiens mRNA; cDNA DKFZp434O0320 (from clone DKFZp434O0320).
JD200597 - Sequence 181621 from Patent EP1572962.
JD384973 - Sequence 365997 from Patent EP1572962.
JD448056 - Sequence 429080 from Patent EP1572962.
JD038146 - Sequence 19170 from Patent EP1572962.
JD288917 - Sequence 269941 from Patent EP1572962.
JD047830 - Sequence 28854 from Patent EP1572962.
JD455939 - Sequence 436963 from Patent EP1572962.
JD187905 - Sequence 168929 from Patent EP1572962.
JD480255 - Sequence 461279 from Patent EP1572962.
JD489955 - Sequence 470979 from Patent EP1572962.
JD500410 - Sequence 481434 from Patent EP1572962.
JD222140 - Sequence 203164 from Patent EP1572962.
JD455909 - Sequence 436933 from Patent EP1572962.
JD510233 - Sequence 491257 from Patent EP1572962.
JD250580 - Sequence 231604 from Patent EP1572962.
JD341150 - Sequence 322174 from Patent EP1572962.
JD450384 - Sequence 431408 from Patent EP1572962.
JD467452 - Sequence 448476 from Patent EP1572962.
JD247411 - Sequence 228435 from Patent EP1572962.
JD540016 - Sequence 521040 from Patent EP1572962.
JD490105 - Sequence 471129 from Patent EP1572962.
JD443723 - Sequence 424747 from Patent EP1572962.
JD067944 - Sequence 48968 from Patent EP1572962.
BC144028 - Homo sapiens cDNA clone IMAGE:9052548.
JD056546 - Sequence 37570 from Patent EP1572962.
JD098614 - Sequence 79638 from Patent EP1572962.
JD323273 - Sequence 304297 from Patent EP1572962.
JD390836 - Sequence 371860 from Patent EP1572962.
JD307010 - Sequence 288034 from Patent EP1572962.
JD437231 - Sequence 418255 from Patent EP1572962.
JD462563 - Sequence 443587 from Patent EP1572962.
JD520231 - Sequence 501255 from Patent EP1572962.
JD249167 - Sequence 230191 from Patent EP1572962.
JD275381 - Sequence 256405 from Patent EP1572962.
JD483498 - Sequence 464522 from Patent EP1572962.
JD497118 - Sequence 478142 from Patent EP1572962.
JD484509 - Sequence 465533 from Patent EP1572962.
JD279030 - Sequence 260054 from Patent EP1572962.
JD483498 - Sequence 464522 from Patent EP1572962.
JD275381 - Sequence 256405 from Patent EP1572962.
JD484509 - Sequence 465533 from Patent EP1572962.
JD497118 - Sequence 478142 from Patent EP1572962.
JD279029 - Sequence 260053 from Patent EP1572962.
JD546376 - Sequence 527400 from Patent EP1572962.
JD348504 - Sequence 329528 from Patent EP1572962.
JD084988 - Sequence 66012 from Patent EP1572962.
JD264011 - Sequence 245035 from Patent EP1572962.
JD267251 - Sequence 248275 from Patent EP1572962.
JD473743 - Sequence 454767 from Patent EP1572962.
JD143633 - Sequence 124657 from Patent EP1572962.
JD222708 - Sequence 203732 from Patent EP1572962.
JD412632 - Sequence 393656 from Patent EP1572962.
JD450179 - Sequence 431203 from Patent EP1572962.
JD157147 - Sequence 138171 from Patent EP1572962.
JD194283 - Sequence 175307 from Patent EP1572962.
JD495988 - Sequence 477012 from Patent EP1572962.
JD476257 - Sequence 457281 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC043250
UCSC ID: uc010chr.2
RefSeq Accession: NR_024406

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: BC043250.1
exon count: 6CDS single in 3' UTR: no RNA size: 2693
ORF size: 0CDS single in intron: no Alignment % ID: 99.40
txCdsPredict score: 8.00frame shift in genome: no % Coverage: 99.22
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.