Human Gene TXNL4B (uc010cgl.2) Description and Page Index
  Description: Homo sapiens thioredoxin-like 4B (TXNL4B), transcript variant 1, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr16:72,072,001-72,127,539 Size: 55,539 Total Exon Count: 6 Strand: -


Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:72,072,001-72,127,539)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneNetworkH-INVHGNC
LynxPubMedStanford SOURCETreefamWikipedia

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.64 RPKM in Testis
Total median expression: 259.78 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK308891 - Homo sapiens cDNA, FLJ98932.
LF208307 - JP 2014500723-A/15810: Polycomb-Associated Non-Coding RNAs.
BC009646 - Homo sapiens thioredoxin-like 4B, mRNA (cDNA clone MGC:4959 IMAGE:3458545), complete cds.
AK000518 - Homo sapiens cDNA FLJ20511 fis, clone KAT09708.
AK222889 - Homo sapiens mRNA for thioredoxin-like 4B variant, clone: HEP20817.
AY566808 - Homo sapiens Dim1-like protein (DLP) mRNA, complete cds.
CR457240 - Homo sapiens full open reading frame cDNA clone RZPDo834A079D for gene FLJ20511, hypothetical protein FLJ20511; complete cds, incl. stopcodon.
HQ448300 - Synthetic construct Homo sapiens clone IMAGE:100071715; CCSB002425_03 thioredoxin-like 4B (TXNL4B) gene, encodes complete protein.
KJ894103 - Synthetic construct Homo sapiens clone ccsbBroadEn_03497 TXNL4B gene, encodes complete protein.
AB464297 - Synthetic construct DNA, clone: pF1KB8190, Homo sapiens TXNL4B gene for thioredoxin-like 4B, without stop codon, in Flexi system.
CU679425 - Synthetic construct Homo sapiens gateway clone IMAGE:100020113 5' read TXNL4B mRNA.
JD334276 - Sequence 315300 from Patent EP1572962.
JD201809 - Sequence 182833 from Patent EP1572962.
MA443884 - JP 2018138019-A/15810: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AK308891
UCSC ID: uc010cgl.2
RefSeq Accession: NM_017853

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: AK308891.1
exon count: 6CDS single in 3' UTR: no RNA size: 1489
ORF size: 0CDS single in intron: no Alignment % ID: 99.53
txCdsPredict score: 520.00frame shift in genome: no % Coverage: 58.50
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.