Human Gene SMYD2 (uc009xdl.1) Description and Page Index
  Description: Homo sapiens SET and MYND domain containing 2 (SMYD2), mRNA.
RefSeq Summary (NM_020197): SET domain-containing proteins, such as SMYD2, catalyze lysine methylation (Brown et al., 2006 [PubMed 16805913]).[supplied by OMIM, Nov 2008]. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR1163657.74249.1, SRR3476690.886304.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1965299, SAMEA1966682 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## MANE Ensembl match :: ENST00000366957.10/ ENSP00000355924.5 RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END##
Transcript (Including UTRs)
   Position: hg19 chr1:214,454,565-214,510,477 Size: 55,913 Total Exon Count: 10 Strand: +


Page IndexSequence and LinksGenetic AssociationsCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:214,454,565-214,510,477)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblExonPrimerGeneNetworkH-INV
HGNCLynxPubMedStanford SOURCE

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): SMYD2
CDC HuGE Published Literature: SMYD2
Positive Disease Associations: Creatinine , Lipids
Related Studies:
  1. Creatinine
    , , . [PubMed 0]
  2. Creatinine
    , , . [PubMed 0]
  3. Creatinine
    , , . [PubMed 0]
           more ... click here to view the complete list

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 53.21 RPKM in Heart - Left Ventricle
Total median expression: 385.30 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC068511 - Homo sapiens SET and MYND domain containing 2, mRNA (cDNA clone IMAGE:30342191).
BC049367 - Homo sapiens SET and MYND domain containing 2, mRNA (cDNA clone MGC:57151 IMAGE:4826617), complete cds.
BC094747 - Homo sapiens SET and MYND domain containing 2, mRNA (cDNA clone IMAGE:30331437), with apparent retained intron.
BC057793 - Homo sapiens cDNA clone IMAGE:5311405, containing frame-shift errors.
BC098133 - Homo sapiens SET and MYND domain containing 2, mRNA (cDNA clone MGC:119303 IMAGE:40005281), complete cds.
BC098276 - Homo sapiens SET and MYND domain containing 2, mRNA (cDNA clone MGC:119304 IMAGE:40005283), complete cds.
BC098305 - Homo sapiens SET and MYND domain containing 2, mRNA (cDNA clone MGC:119305 IMAGE:40005284), complete cds.
BC098335 - Homo sapiens SET and MYND domain containing 2, mRNA (cDNA clone MGC:119302 IMAGE:40005280), complete cds.
AF226053 - Homo sapiens HSKM-B (HSKM-B) mRNA, complete cds.
BC028104 - Homo sapiens SET and MYND domain containing 2, mRNA (cDNA clone IMAGE:5246939), partial cds.
KJ904828 - Synthetic construct Homo sapiens clone ccsbBroadEn_14222 SMYD2 gene, encodes complete protein.
AK313868 - Homo sapiens cDNA, FLJ94501, Homo sapiens SET and MYND domain containing 2 (SMYD2), mRNA.
AB590916 - Synthetic construct DNA, clone: pFN21AE1903, Homo sapiens SMYD2 gene for SET and MYND domain containing 2, without stop codon, in Flexi system.
BC039890 - Homo sapiens SET and MYND domain containing 2, mRNA (cDNA clone IMAGE:5198510), partial cds.
AK098683 - Homo sapiens cDNA FLJ25817 fis, clone TST07537, highly similar to Homo sapiens HSKM-B (HSKM-B) mRNA.
BC017080 - Homo sapiens SET and MYND domain containing 2, mRNA (cDNA clone IMAGE:3848215), partial cds.
AK091590 - Homo sapiens cDNA FLJ34271 fis, clone FEBRA2003115, moderately similar to Homo sapiens HSKM-B (HSKM-B) mRNA.
AX747078 - Sequence 603 from Patent EP1308459.
AK090571 - Homo sapiens cDNA FLJ33252 fis, clone ASTRO2005273.
JD168502 - Sequence 149526 from Patent EP1572962.
JD316376 - Sequence 297400 from Patent EP1572962.
JD091967 - Sequence 72991 from Patent EP1572962.
JD048413 - Sequence 29437 from Patent EP1572962.
AF070592 - Homo sapiens clone 24503 mRNA sequence.
JD327620 - Sequence 308644 from Patent EP1572962.
JD280189 - Sequence 261213 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC098305
UCSC ID: uc009xdl.1
RefSeq Accession: NM_020197

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: BC098305.1
exon count: 10CDS single in 3' UTR: no RNA size: 1078
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1438.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.