Human Gene SCARNA16 (uc002jtl.3) Description and Page Index
  Description: Homo sapiens small Cajal body-specific RNA 16 (SCARNA16), guide RNA.
Transcript (Including UTRs)
   Position: hg19 chr17:75,085,389-75,085,575 Size: 187 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksRNA-Seq ExpressionOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:75,085,389-75,085,575)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerHGNCLynxPubMed
Stanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.45 RPKM in Spleen
Total median expression: 238.51 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AJ609486 - Homo sapiens ACA47 scaRNA gene.
JD025504 - Sequence 6528 from Patent EP1572962.
JD026087 - Sequence 7111 from Patent EP1572962.
DL491275 - Novel nucleic acids.
DL489915 - Novel nucleic acids.
LP951913 - Sequence 419 from Patent WO2017157650.
JD034717 - Sequence 15741 from Patent EP1572962.
JD029259 - Sequence 10283 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_003013
UCSC ID: uc002jtl.3
RefSeq Accession: NR_003013

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_003013.1
exon count: 1CDS single in 3' UTR: no RNA size: 187
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 260.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.