Human Gene AK302511 (uc002fqs.2) Description and Page Index
  Description: SubName: Full=cDNA FLJ61476;
Transcript (Including UTRs)
   Position: hg19 chr16:90,224,863-90,233,897 Size: 9,035 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr16:90,232,651-90,233,754 Size: 1,104 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Protein StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:90,224,863-90,233,897)mRNA (may differ from genome)Protein (367 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
GeneCardsH-INVMGIPubMedStanford SOURCEUniProtKB

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.88 RPKM in Whole Blood
Total median expression: 47.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -250.36813-0.308 Picture PostScript Text
3' UTR -36.00143-0.252 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF15788 - Domain of unknown function (DUF4705)

ModBase Predicted Comparative 3D Structure on B4DYM5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK302511 - Homo sapiens cDNA FLJ61476 complete cds.
DQ593908 - Homo sapiens piRNA piR-34020, complete sequence.
JD295139 - Sequence 276163 from Patent EP1572962.
JD048854 - Sequence 29878 from Patent EP1572962.
JD098617 - Sequence 79641 from Patent EP1572962.
JD386349 - Sequence 367373 from Patent EP1572962.
JD171508 - Sequence 152532 from Patent EP1572962.
DQ595057 - Homo sapiens piRNA piR-61169, complete sequence.
JD460292 - Sequence 441316 from Patent EP1572962.
DQ600587 - Homo sapiens piRNA piR-38653, complete sequence.
JD422535 - Sequence 403559 from Patent EP1572962.
DQ584937 - Homo sapiens piRNA piR-52049, complete sequence.
JD459796 - Sequence 440820 from Patent EP1572962.
JD049302 - Sequence 30326 from Patent EP1572962.
DQ574318 - Homo sapiens piRNA piR-42430, complete sequence.
DQ574835 - Homo sapiens piRNA piR-42947, complete sequence.
DQ599768 - Homo sapiens piRNA piR-37834, complete sequence.
JD363412 - Sequence 344436 from Patent EP1572962.
JD262631 - Sequence 243655 from Patent EP1572962.
JD338139 - Sequence 319163 from Patent EP1572962.
JD422600 - Sequence 403624 from Patent EP1572962.
JD133347 - Sequence 114371 from Patent EP1572962.
JD153711 - Sequence 134735 from Patent EP1572962.
JD528207 - Sequence 509231 from Patent EP1572962.
JD428549 - Sequence 409573 from Patent EP1572962.
JD550651 - Sequence 531675 from Patent EP1572962.
JD262371 - Sequence 243395 from Patent EP1572962.
JD546925 - Sequence 527949 from Patent EP1572962.
JD546926 - Sequence 527950 from Patent EP1572962.
JD404699 - Sequence 385723 from Patent EP1572962.
JD098406 - Sequence 79430 from Patent EP1572962.
JD199168 - Sequence 180192 from Patent EP1572962.
JD105026 - Sequence 86050 from Patent EP1572962.
JD119230 - Sequence 100254 from Patent EP1572962.
JD107843 - Sequence 88867 from Patent EP1572962.
DQ575105 - Homo sapiens piRNA piR-43217, complete sequence.
JD479433 - Sequence 460457 from Patent EP1572962.
JD177586 - Sequence 158610 from Patent EP1572962.
DQ595057 - Homo sapiens piRNA piR-61169, complete sequence.
DQ574670 - Homo sapiens piRNA piR-42782, complete sequence.
JD118872 - Sequence 99896 from Patent EP1572962.
JD118873 - Sequence 99897 from Patent EP1572962.
JD209903 - Sequence 190927 from Patent EP1572962.
JD456771 - Sequence 437795 from Patent EP1572962.
DQ592480 - Homo sapiens piRNA piR-59592, complete sequence.
DQ599872 - Homo sapiens piRNA piR-37938, complete sequence.
DQ599873 - Homo sapiens piRNA piR-37939, complete sequence.
DQ599874 - Homo sapiens piRNA piR-37940, complete sequence.
DQ596298 - Homo sapiens piRNA piR-34364, complete sequence.
DQ597235 - Homo sapiens piRNA piR-35301, complete sequence.
JD075651 - Sequence 56675 from Patent EP1572962.
JD460292 - Sequence 441316 from Patent EP1572962.
DQ600587 - Homo sapiens piRNA piR-38653, complete sequence.
JD422535 - Sequence 403559 from Patent EP1572962.
DQ584937 - Homo sapiens piRNA piR-52049, complete sequence.
JD459796 - Sequence 440820 from Patent EP1572962.
JD049302 - Sequence 30326 from Patent EP1572962.
DQ574318 - Homo sapiens piRNA piR-42430, complete sequence.
DQ574835 - Homo sapiens piRNA piR-42947, complete sequence.
DQ599768 - Homo sapiens piRNA piR-37834, complete sequence.
JD363412 - Sequence 344436 from Patent EP1572962.
JD262631 - Sequence 243655 from Patent EP1572962.
JD338139 - Sequence 319163 from Patent EP1572962.
JD422600 - Sequence 403624 from Patent EP1572962.
JD087192 - Sequence 68216 from Patent EP1572962.
JD295056 - Sequence 276080 from Patent EP1572962.
JD387613 - Sequence 368637 from Patent EP1572962.
JD258247 - Sequence 239271 from Patent EP1572962.
JD375182 - Sequence 356206 from Patent EP1572962.
JD079421 - Sequence 60445 from Patent EP1572962.
DQ572955 - Homo sapiens piRNA piR-41067, complete sequence.
DQ575018 - Homo sapiens piRNA piR-43130, complete sequence.
JD320934 - Sequence 301958 from Patent EP1572962.
DQ595736 - Homo sapiens piRNA piR-61848, complete sequence.
JD370485 - Sequence 351509 from Patent EP1572962.
JD536537 - Sequence 517561 from Patent EP1572962.
JD536538 - Sequence 517562 from Patent EP1572962.
DQ577524 - Homo sapiens piRNA piR-45636, complete sequence.
DQ572788 - Homo sapiens piRNA piR-40900, complete sequence.
JD387791 - Sequence 368815 from Patent EP1572962.
JD387792 - Sequence 368816 from Patent EP1572962.
DQ598407 - Homo sapiens piRNA piR-36473, complete sequence.
JD336976 - Sequence 318000 from Patent EP1572962.
JD258244 - Sequence 239268 from Patent EP1572962.
JD411284 - Sequence 392308 from Patent EP1572962.
JD107100 - Sequence 88124 from Patent EP1572962.
DQ589481 - Homo sapiens piRNA piR-56593, complete sequence.
JD219716 - Sequence 200740 from Patent EP1572962.
JD180704 - Sequence 161728 from Patent EP1572962.
DQ580039 - Homo sapiens piRNA piR-48151, complete sequence.
DQ586255 - Homo sapiens piRNA piR-53367, complete sequence.
JD317554 - Sequence 298578 from Patent EP1572962.
JD317553 - Sequence 298577 from Patent EP1572962.
JD105217 - Sequence 86241 from Patent EP1572962.
JD105216 - Sequence 86240 from Patent EP1572962.
JD260725 - Sequence 241749 from Patent EP1572962.
JD156355 - Sequence 137379 from Patent EP1572962.
JD453018 - Sequence 434042 from Patent EP1572962.
JD107007 - Sequence 88031 from Patent EP1572962.
JD370486 - Sequence 351510 from Patent EP1572962.
JD114170 - Sequence 95194 from Patent EP1572962.
JD547834 - Sequence 528858 from Patent EP1572962.
JD234509 - Sequence 215533 from Patent EP1572962.
DQ576962 - Homo sapiens piRNA piR-45074, complete sequence.
JD227787 - Sequence 208811 from Patent EP1572962.
JD203987 - Sequence 185011 from Patent EP1572962.
JD417489 - Sequence 398513 from Patent EP1572962.
JD422543 - Sequence 403567 from Patent EP1572962.
JD382336 - Sequence 363360 from Patent EP1572962.
DQ590432 - Homo sapiens piRNA piR-57544, complete sequence.
JD368262 - Sequence 349286 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B4DYM5, B4DYM5_HUMAN
UCSC ID: uc002fqs.2
Representative RNA: AK302511
Protein: B4DYM5

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK302511.1
exon count: 7CDS single in 3' UTR: no RNA size: 2066
ORF size: 1104CDS single in intron: no Alignment % ID: 99.32
txCdsPredict score: 856.50frame shift in genome: no % Coverage: 99.66
has start codon: yes stop codon in genome: no # of Alignments: 4
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.