Human Gene C16orf3 (uc002fqk.1) Description and Page Index
  Description: Homo sapiens chromosome 16 open reading frame 3 (C16orf3), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr16:90,095,316-90,096,309 Size: 994 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr16:90,095,397-90,095,750 Size: 354 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:90,095,316-90,096,309)mRNA (may differ from genome)Protein (117 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneCardsGeneNetworkHGNCHPRD
LynxMGIneXtProtPubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: CP003_HUMAN
DESCRIPTION: RecName: Full=Uncharacterized protein C16orf3;
POLYMORPHISM: There seems to be two alleles of this protein.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.41 RPKM in Brain - Cerebellum
Total median expression: 18.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -186.50559-0.334 Picture PostScript Text
3' UTR -14.8081-0.183 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on O95177
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function

Biological Process:
GO:0008150 biological_process

Cellular Component:
GO:0005575 cellular_component


-  Descriptions from all associated GenBank mRNAs
  AF050080 - Homo sapiens C16orf3 small protein mRNA, complete cds.
AF050081 - Homo sapiens C16orf3 large protein mRNA, complete cds.
BC093751 - Homo sapiens chromosome 16 open reading frame 3, mRNA (cDNA clone MGC:120786 IMAGE:7939596), complete cds.
BC104849 - Homo sapiens chromosome 16 open reading frame 3, mRNA (cDNA clone MGC:132509 IMAGE:8143852), complete cds.
JD351222 - Sequence 332246 from Patent EP1572962.
JD157283 - Sequence 138307 from Patent EP1572962.
KJ890800 - Synthetic construct Homo sapiens clone ccsbBroadEn_00194 C16orf3 gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: CP003_HUMAN, NM_001214, NP_001205, O95176, O95177, Q52LX9
UCSC ID: uc002fqk.1
RefSeq Accession: NM_001214
Protein: O95177 (aka CP003_HUMAN or CP03_HUMAN)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001214.3
exon count: 1CDS single in 3' UTR: no RNA size: 1000
ORF size: 354CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 489.00frame shift in genome: no % Coverage: 99.40
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.