Human Gene AFG3L1P (uc002fqb.1) Description and Page Index
  Description: Homo sapiens AFG3 ATPase family member 3-like 1 (S. cerevisiae), pseudogene (AFG3L1P), transcript variant 3, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr16:90,055,190-90,067,195 Size: 12,006 Total Exon Count: 7 Strand: +


Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:90,055,190-90,067,195)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerH-INVHGNCLynxPubMed
Stanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.97 RPKM in Brain - Cerebellum
Total median expression: 174.41 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK126911 - Homo sapiens cDNA FLJ44963 fis, clone BRAWH2014053, highly similar to Homo sapiens AFG3 ATPase family gene 3-like 1 (yeast) (AFG3L1), transcript variant 1, mRNA.
AK056488 - Homo sapiens cDNA FLJ31926 fis, clone NT2RP7005502, highly similar to Homo sapiens AFG3 ATPase family gene 3-like 1 (yeast) (AFG3L1), transcript variant 1, mRNA.
AK097044 - Homo sapiens cDNA FLJ39725 fis, clone SMINT2015294, highly similar to Mus musculus ATP-dependent zinc metalloprotease (Afg3l1) mRNA.
AK091293 - Homo sapiens cDNA FLJ33974 fis, clone DFNES2002550, highly similar to Homo sapiens AFG3 ATPase family gene 3-like 1 (yeast) (AFG3L1), transcript variant 1, mRNA.
AX746898 - Sequence 423 from Patent EP1308459.
AF329691 - Homo sapiens AFG3L1 isoform 1 mRNA, partial sequence.
BC021245 - Homo sapiens AFG3 ATPase family gene 3-like 1 (S. cerevisiae), mRNA (cDNA clone IMAGE:4334866).
AK128804 - Homo sapiens cDNA FLJ45794 fis, clone NT2RI2009239.
AF329692 - Homo sapiens AFG3L1 isoform 2 mRNA, partial sequence.
AL832984 - Homo sapiens mRNA; cDNA DKFZp666D103 (from clone DKFZp666D103).
CU676890 - Synthetic construct Homo sapiens gateway clone IMAGE:100017546 5' read AFG3L1 mRNA.
KJ900826 - Synthetic construct Homo sapiens clone ccsbBroadEn_10220 AFG3L1P gene, encodes complete protein.
AK128352 - Homo sapiens cDNA FLJ46494 fis, clone THYMU3028410, weakly similar to AFG3-like protein 1 (EC 3.4.24.-).
AJ001495 - Homo sapiens mRNA for AFG3-like protein.
JD166314 - Sequence 147338 from Patent EP1572962.
AK091727 - Homo sapiens cDNA FLJ34408 fis, clone HEART2000959, moderately similar to Homo sapiens mRNA for paraplegin-like protein.
AX747147 - Sequence 672 from Patent EP1308459.
AK127143 - Homo sapiens cDNA FLJ45200 fis, clone BRCAN2006051, moderately similar to AFG3-like protein 2 (EC 3.4.24.-).

-  Other Names for This Gene
  Alternate Gene Symbols: AF329692
UCSC ID: uc002fqb.1
RefSeq Accession: NR_003228

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: AF329692.1
exon count: 7CDS single in 3' UTR: no RNA size: 1043
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 596.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 70# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.