Human Gene AFG3L1P (uc002fpy.1) Description and Page Index
  Description: Homo sapiens AFG3 ATPase family member 3-like 1 (S. cerevisiae), pseudogene (AFG3L1P), transcript variant 3, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr16:90,044,086-90,051,109 Size: 7,024 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr16:90,046,668-90,051,088 Size: 4,421 Coding Exon Count: 3 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:90,044,086-90,051,109)mRNA (may differ from genome)Protein (125 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsH-INVHGNC
LynxMGIPubMedStanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.97 RPKM in Brain - Cerebellum
Total median expression: 174.41 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -55.00212-0.259 Picture PostScript Text
3' UTR -1.0021-0.048 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
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-  Descriptions from all associated GenBank mRNAs
  AK126911 - Homo sapiens cDNA FLJ44963 fis, clone BRAWH2014053, highly similar to Homo sapiens AFG3 ATPase family gene 3-like 1 (yeast) (AFG3L1), transcript variant 1, mRNA.
AK056488 - Homo sapiens cDNA FLJ31926 fis, clone NT2RP7005502, highly similar to Homo sapiens AFG3 ATPase family gene 3-like 1 (yeast) (AFG3L1), transcript variant 1, mRNA.
AK097044 - Homo sapiens cDNA FLJ39725 fis, clone SMINT2015294, highly similar to Mus musculus ATP-dependent zinc metalloprotease (Afg3l1) mRNA.
AK091293 - Homo sapiens cDNA FLJ33974 fis, clone DFNES2002550, highly similar to Homo sapiens AFG3 ATPase family gene 3-like 1 (yeast) (AFG3L1), transcript variant 1, mRNA.
AX746898 - Sequence 423 from Patent EP1308459.
BC045753 - Homo sapiens AFG3 ATPase family gene 3-like 1 (S. cerevisiae), mRNA (cDNA clone IMAGE:4837457), with apparent retained intron.
AF329693 - Homo sapiens AFG3L1 isoform 3 mRNA, partial sequence.
AF329694 - Homo sapiens AFG3L1 isoform 4 mRNA, partial sequence.
AF329691 - Homo sapiens AFG3L1 isoform 1 mRNA, partial sequence.
BC021245 - Homo sapiens AFG3 ATPase family gene 3-like 1 (S. cerevisiae), mRNA (cDNA clone IMAGE:4334866).
JD167711 - Sequence 148735 from Patent EP1572962.
JD329465 - Sequence 310489 from Patent EP1572962.
JD313575 - Sequence 294599 from Patent EP1572962.
AK128804 - Homo sapiens cDNA FLJ45794 fis, clone NT2RI2009239.
JD494973 - Sequence 475997 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AF329693
UCSC ID: uc002fpy.1
RefSeq Accession: NR_003228

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AF329693.1
exon count: 5CDS single in 3' UTR: no RNA size: 621
ORF size: 378CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 927.00frame shift in genome: no % Coverage: 95.01
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 84# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.