Human Gene AX748291 (uc002fna.1) Description and Page Index
  Description: Homo sapiens cDNA FLJ36443 fis, clone THYMU2012891.
Transcript (Including UTRs)
   Position: hg19 chr16:89,343,886-89,346,124 Size: 2,239 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr16:89,344,940-89,345,944 Size: 1,005 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesMicroarray ExpressionRNA StructureOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:89,343,886-89,346,124)mRNA (may differ from genome)Protein (334 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaExonPrimer
GeneCardsH-INVMGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -68.10180-0.378 Picture PostScript Text
3' UTR -450.311054-0.427 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
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-  Descriptions from all associated GenBank mRNAs
  AY373756 - Homo sapiens ankyrin repeat-containing protein (ANKRD11) mRNA, complete cds.
AY533563 - Homo sapiens ankyrin repeat-containing cofactor-1 (ANCO1) mRNA, complete cds.
AK093762 - Homo sapiens cDNA FLJ36443 fis, clone THYMU2012891.
AX748291 - Sequence 1816 from Patent EP1308459.
JD345083 - Sequence 326107 from Patent EP1572962.
JD380782 - Sequence 361806 from Patent EP1572962.
JD188796 - Sequence 169820 from Patent EP1572962.
JD055731 - Sequence 36755 from Patent EP1572962.
JD173773 - Sequence 154797 from Patent EP1572962.
JD438667 - Sequence 419691 from Patent EP1572962.
JD199359 - Sequence 180383 from Patent EP1572962.
JD399247 - Sequence 380271 from Patent EP1572962.
JD456346 - Sequence 437370 from Patent EP1572962.
JD201555 - Sequence 182579 from Patent EP1572962.
JD467250 - Sequence 448274 from Patent EP1572962.
JD103955 - Sequence 84979 from Patent EP1572962.
JD207842 - Sequence 188866 from Patent EP1572962.
JD150429 - Sequence 131453 from Patent EP1572962.
JD075124 - Sequence 56148 from Patent EP1572962.
JD253093 - Sequence 234117 from Patent EP1572962.
JD288901 - Sequence 269925 from Patent EP1572962.
DQ592960 - Homo sapiens piRNA piR-33072, complete sequence.

-  Other Names for This Gene
  UCSC ID: uc002fna.1
Representative RNA: AX748291

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AX748291.1
exon count: 1CDS single in 3' UTR: no RNA size: 2239
ORF size: 1005CDS single in intron: no Alignment % ID: 99.69
txCdsPredict score: 1632.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.