Human Gene CTD-2555A7.2 (uc002fmo.1)
  Description: Homo sapiens cDNA FLJ30710 fis, clone FCBBF2001299.
Transcript (Including UTRs)
   Position: hg19 chr16:89,112,580-89,119,373 Size: 6,794 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr16:89,114,161-89,119,262 Size: 5,102 Coding Exon Count: 2 

Page IndexSequence and LinksPrimersGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:89,112,580-89,119,373)mRNA (may differ from genome)Protein (153 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
GeneCardsH-INVMGIPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.43 RPKM in Brain - Cerebellum
Total median expression: 26.12 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -48.80111-0.440 Picture PostScript Text
3' UTR -613.701581-0.388 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK055272 - Homo sapiens cDNA FLJ30710 fis, clone FCBBF2001299.
JD186629 - Sequence 167653 from Patent EP1572962.
JD337330 - Sequence 318354 from Patent EP1572962.
JD112683 - Sequence 93707 from Patent EP1572962.
JD301619 - Sequence 282643 from Patent EP1572962.
JD488268 - Sequence 469292 from Patent EP1572962.
JD544877 - Sequence 525901 from Patent EP1572962.
JD512462 - Sequence 493486 from Patent EP1572962.
JD382334 - Sequence 363358 from Patent EP1572962.
JD386940 - Sequence 367964 from Patent EP1572962.
JD456811 - Sequence 437835 from Patent EP1572962.
JD465658 - Sequence 446682 from Patent EP1572962.
JD322707 - Sequence 303731 from Patent EP1572962.
JD394260 - Sequence 375284 from Patent EP1572962.
JD122257 - Sequence 103281 from Patent EP1572962.
JD238873 - Sequence 219897 from Patent EP1572962.
JD355023 - Sequence 336047 from Patent EP1572962.
JD526409 - Sequence 507433 from Patent EP1572962.
JD549726 - Sequence 530750 from Patent EP1572962.
JD195735 - Sequence 176759 from Patent EP1572962.
JD158384 - Sequence 139408 from Patent EP1572962.
JD519774 - Sequence 500798 from Patent EP1572962.
JD525619 - Sequence 506643 from Patent EP1572962.
JD447500 - Sequence 428524 from Patent EP1572962.
JD241611 - Sequence 222635 from Patent EP1572962.
JD058213 - Sequence 39237 from Patent EP1572962.
JD534673 - Sequence 515697 from Patent EP1572962.
JD501299 - Sequence 482323 from Patent EP1572962.
JD386617 - Sequence 367641 from Patent EP1572962.
JD465993 - Sequence 447017 from Patent EP1572962.
JD407871 - Sequence 388895 from Patent EP1572962.
JD108333 - Sequence 89357 from Patent EP1572962.
JD173607 - Sequence 154631 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK055272
UCSC ID: uc002fmo.1
Representative RNA: AK055272

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK055272.1
exon count: 2CDS single in 3' UTR: no RNA size: 2156
ORF size: 462CDS single in intron: no Alignment % ID: 99.91
txCdsPredict score: 679.00frame shift in genome: no % Coverage: 99.91
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.