Human Gene AK055272 (uc002fmo.1) Description and Page Index
  Description: Homo sapiens cDNA FLJ30710 fis, clone FCBBF2001299.
Transcript (Including UTRs)
   Position: hg19 chr16:89,112,580-89,119,373 Size: 6,794 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr16:89,114,161-89,119,262 Size: 5,102 Coding Exon Count: 2 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:89,112,580-89,119,373)mRNA (may differ from genome)Protein (153 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaCGAPEnsembl
ExonPrimerGeneCardsH-INVMGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.43 RPKM in Brain - Cerebellum
Total median expression: 26.12 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -48.80111-0.440 Picture PostScript Text
3' UTR -613.701581-0.388 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK055272 - Homo sapiens cDNA FLJ30710 fis, clone FCBBF2001299.
JD186629 - Sequence 167653 from Patent EP1572962.
JD337330 - Sequence 318354 from Patent EP1572962.
JD112683 - Sequence 93707 from Patent EP1572962.
JD301619 - Sequence 282643 from Patent EP1572962.
JD488268 - Sequence 469292 from Patent EP1572962.
JD544877 - Sequence 525901 from Patent EP1572962.
JD512462 - Sequence 493486 from Patent EP1572962.
JD382334 - Sequence 363358 from Patent EP1572962.
JD386940 - Sequence 367964 from Patent EP1572962.
JD456811 - Sequence 437835 from Patent EP1572962.
JD465658 - Sequence 446682 from Patent EP1572962.
JD322707 - Sequence 303731 from Patent EP1572962.
JD394260 - Sequence 375284 from Patent EP1572962.
JD122257 - Sequence 103281 from Patent EP1572962.
JD238873 - Sequence 219897 from Patent EP1572962.
JD355023 - Sequence 336047 from Patent EP1572962.
JD526409 - Sequence 507433 from Patent EP1572962.
JD549726 - Sequence 530750 from Patent EP1572962.
JD195735 - Sequence 176759 from Patent EP1572962.
JD158384 - Sequence 139408 from Patent EP1572962.
JD519774 - Sequence 500798 from Patent EP1572962.
JD525619 - Sequence 506643 from Patent EP1572962.
JD447500 - Sequence 428524 from Patent EP1572962.
JD241611 - Sequence 222635 from Patent EP1572962.
JD058213 - Sequence 39237 from Patent EP1572962.
JD534673 - Sequence 515697 from Patent EP1572962.
JD501299 - Sequence 482323 from Patent EP1572962.
JD386617 - Sequence 367641 from Patent EP1572962.
JD465993 - Sequence 447017 from Patent EP1572962.
JD407871 - Sequence 388895 from Patent EP1572962.
JD108333 - Sequence 89357 from Patent EP1572962.
JD173607 - Sequence 154631 from Patent EP1572962.

-  Other Names for This Gene
  UCSC ID: uc002fmo.1
Representative RNA: AK055272

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK055272.1
exon count: 2CDS single in 3' UTR: no RNA size: 2156
ORF size: 462CDS single in intron: no Alignment % ID: 99.91
txCdsPredict score: 679.00frame shift in genome: no % Coverage: 99.91
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.