Human Gene PMFBP1 (uc002fce.3) Description and Page Index
  Description: Homo sapiens polyamine modulated factor 1 binding protein 1 (PMFBP1), transcript variant 1, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr16:72,152,996-72,206,064 Size: 53,069 Total Exon Count: 18 Strand: -


Page IndexSequence and LinksGenetic AssociationsCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:72,152,996-72,206,064)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneNetworkH-INVHGNC
LynxPubMedStanford SOURCETreefamWikipedia

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): PMFBP1
CDC HuGE Published Literature: PMFBP1
Positive Disease Associations: Alkaline Phosphatase
Related Studies:
  1. Alkaline Phosphatase
    John C Chambers et al. Nature genetics 2011, Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma., Nature genetics. [PubMed 22001757]

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.93 RPKM in Testis
Total median expression: 21.69 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AF239683 - Homo sapiens PMF-1 binding protein mRNA, complete cds.
BC028423 - Homo sapiens polyamine modulated factor 1 binding protein 1, mRNA (cDNA clone MGC:33685 IMAGE:4822328), complete cds.
AL136795 - Homo sapiens mRNA; cDNA DKFZp434G131 (from clone DKFZp434G131).
JD168038 - Sequence 149062 from Patent EP1572962.
AK122925 - Homo sapiens cDNA FLJ16610 fis, clone TESTI4011532, highly similar to Homo sapiens polyamine modulated factor 1 binding protein 1 (PMFBP1), mRNA.
AK093285 - Homo sapiens cDNA FLJ35966 fis, clone TESTI2012628, moderately similar to Mus musculus STAP mRNA for sperm tail associated protein.
AX748032 - Sequence 1557 from Patent EP1308459.
JD500232 - Sequence 481256 from Patent EP1572962.
JD196736 - Sequence 177760 from Patent EP1572962.
AK315004 - Homo sapiens cDNA, FLJ95932, Homo sapiens polyamine modulated factor 1 binding protein 1(PMFBP1), mRNA.
AM392894 - Synthetic construct Homo sapiens clone IMAGE:100001824 for hypothetical protein (PMFBP1 gene).
EU446675 - Synthetic construct Homo sapiens clone IMAGE:100070316; IMAGE:100011884; FLH258401.01L polyamine modulated factor 1 binding protein 1 (PMFBP1) gene, encodes complete protein.
AK097465 - Homo sapiens cDNA FLJ40146 fis, clone TESTI2013212, moderately similar to Mus musculus STAP mRNA for sperm tail associated protein.
JD147274 - Sequence 128298 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AX748032
UCSC ID: uc002fce.3
RefSeq Accession: NM_031293

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: AX748032.1
exon count: 18CDS single in 3' UTR: no RNA size: 2797
ORF size: 0CDS single in intron: no Alignment % ID: 99.93
txCdsPredict score: 2842.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.