Human Gene MARVELD3 (uc002fas.2) Description and Page Index
  Description: Homo sapiens MARVEL domain containing 3 (MARVELD3), transcript variant 1, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr16:71,660,056-71,663,577 Size: 3,522 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr16:71,660,133-71,663,462 Size: 3,330 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:71,660,056-71,663,577)mRNA (may differ from genome)Protein (219 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
H-INVHGNCLynxMGIOMIMPubMed
Stanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: J3KSM2_HUMAN
DESCRIPTION: SubName: Full=MARVEL domain-containing protein 3;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.80 RPKM in Small Intestine - Terminal Ileum
Total median expression: 39.91 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -31.6077-0.410 Picture PostScript Text
3' UTR -19.00115-0.165 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on J3KSM2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF212239 - JP 2014500723-A/19742: Polycomb-Associated Non-Coding RNAs.
BC005052 - Homo sapiens MARVEL domain containing 3, mRNA (cDNA clone IMAGE:2820819), partial cds.
AK307585 - Homo sapiens cDNA, FLJ97533.
BC011893 - Homo sapiens MARVEL domain containing 3, mRNA (cDNA clone MGC:20498 IMAGE:3942185), complete cds.
BC013376 - Homo sapiens MARVEL domain containing 3, mRNA (cDNA clone MGC:16443 IMAGE:3946889), complete cds.
AK292185 - Homo sapiens cDNA FLJ77508 complete cds, highly similar to Homo sapiens MARVEL domain containing 3 (MARVELD3), transcript variant 1, mRNA.
AK056842 - Homo sapiens cDNA FLJ32280 fis, clone PROST2000176, weakly similar to RD PROTEIN.
CU680584 - Synthetic construct Homo sapiens gateway clone IMAGE:100019242 5' read MARVELD3 mRNA.
HQ447264 - Synthetic construct Homo sapiens clone IMAGE:100070574; CCSB006652_01 MARVEL domain containing 3 (MARVELD3) gene, encodes complete protein.
KJ899929 - Synthetic construct Homo sapiens clone ccsbBroadEn_09323 MARVELD3 gene, encodes complete protein.
LF213141 - JP 2014500723-A/20644: Polycomb-Associated Non-Coding RNAs.
MA447816 - JP 2018138019-A/19742: Polycomb-Associated Non-Coding RNAs.
MA448718 - JP 2018138019-A/20644: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: BC005052, J3KSM2, J3KSM2_HUMAN, NM_001017967, NP_001017967, uc002fas.1
UCSC ID: uc002fas.2
RefSeq Accession: NM_001017967
Protein: J3KSM2

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC005052.1
exon count: 2CDS single in 3' UTR: no RNA size: 863
ORF size: 660CDS single in intron: no Alignment % ID: 99.76
txCdsPredict score: 1289.00frame shift in genome: no % Coverage: 97.80
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 180# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.