Human Gene VAC14-AS1 (uc002ezp.2) Description and Page Index
  Description: Homo sapiens VAC14 antisense RNA 1 (VAC14-AS1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr16:70,788,963-70,807,154 Size: 18,192 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr16:70,789,103-70,802,838 Size: 13,736 Coding Exon Count: 5 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Protein StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr16:70,788,963-70,807,154)mRNA (may differ from genome)Protein (144 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerGeneCardsH-INVMGIPubMed
Stanford SOURCEUniProtKB

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.83 RPKM in Brain - Cerebellum
Total median expression: 30.15 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -62.20140-0.444 Picture PostScript Text
3' UTR -507.201652-0.307 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q8N9D1
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  LF208315 - JP 2014500723-A/15818: Polycomb-Associated Non-Coding RNAs.
MA443892 - JP 2018138019-A/15818: Polycomb-Associated Non-Coding RNAs.
BC035152 - Homo sapiens cDNA clone IMAGE:5265084.
AK095020 - Homo sapiens cDNA FLJ37701 fis, clone BRHIP2016990.

-  Other Names for This Gene
  Alternate Gene Symbols: hCG_1998535, NR_034083, Q8N9D1, Q8N9D1_HUMAN
UCSC ID: uc002ezp.2
RefSeq Accession: NR_034083
Protein: Q8N9D1

-  Gene Model Information
category: coding nonsense-mediated-decay: no RNA accession: NR_034083.1
exon count: 6CDS single in 3' UTR: no RNA size: 2228
ORF size: 435CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 751.00frame shift in genome: no % Coverage: 99.96
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.