Human Gene VASH2 (uc001hjv.2) Description and Page Index
  Description: Homo sapiens vasohibin 2 (VASH2), transcript variant 3, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr1:213,123,887-213,148,269 Size: 24,383 Total Exon Count: 6 Strand: +


Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:213,123,887-213,148,269)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerH-INVHGNCLynx
PubMedStanford SOURCETreefam

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.89 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 28.06 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF211777 - JP 2014500723-A/19280: Polycomb-Associated Non-Coding RNAs.
LF205514 - JP 2014500723-A/13017: Polycomb-Associated Non-Coding RNAs.
AK290973 - Homo sapiens cDNA FLJ77735 complete cds.
AK096605 - Homo sapiens cDNA FLJ39286 fis, clone OCBBF2011855.
AK022567 - Homo sapiens cDNA FLJ12505 fis, clone NT2RM2001699.
BC053836 - Homo sapiens vasohibin 2, mRNA (cDNA clone MGC:59727 IMAGE:5802700), complete cds.
JD361402 - Sequence 342426 from Patent EP1572962.
BC051856 - Homo sapiens vasohibin 2, mRNA (cDNA clone MGC:60211 IMAGE:6067012), complete cds.
JD370460 - Sequence 351484 from Patent EP1572962.
BC028194 - Homo sapiens vasohibin 2, mRNA (cDNA clone MGC:39884 IMAGE:5164251), complete cds.
JD387418 - Sequence 368442 from Patent EP1572962.
JD456950 - Sequence 437974 from Patent EP1572962.
AK302675 - Homo sapiens cDNA FLJ54807 complete cds, highly similar to Vasohibin-like protein.
KJ903227 - Synthetic construct Homo sapiens clone ccsbBroadEn_12621 VASH2 gene, encodes complete protein.
KJ894736 - Synthetic construct Homo sapiens clone ccsbBroadEn_04130 VASH2 gene, encodes complete protein.
AY834202 - Homo sapiens FLJ12505 protein (FLJ12505) mRNA, complete cds.
HM005535 - Homo sapiens clone HTL-T-222 testicular tissue protein Li 222 mRNA, complete cds.
KJ906322 - Synthetic construct Homo sapiens clone ccsbBroadEn_15992 VASH2 gene, encodes complete protein.
LF321411 - JP 2014500723-A/128914: Polycomb-Associated Non-Coding RNAs.
LF321410 - JP 2014500723-A/128913: Polycomb-Associated Non-Coding RNAs.
MA556988 - JP 2018138019-A/128914: Polycomb-Associated Non-Coding RNAs.
MA556987 - JP 2018138019-A/128913: Polycomb-Associated Non-Coding RNAs.
MA447354 - JP 2018138019-A/19280: Polycomb-Associated Non-Coding RNAs.
MA441091 - JP 2018138019-A/13017: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: BC028194
UCSC ID: uc001hjv.2
RefSeq Accession: NM_001136475

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: BC028194.1
exon count: 6CDS single in 3' UTR: no RNA size: 1790
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 440.00frame shift in genome: no % Coverage: 96.65
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.