Human Gene FLVCR1-AS1 (uc001hjs.5) Description and Page Index
  Description: Homo sapiens FLVCR1 antisense RNA 1 (head to head) (FLVCR1-AS1), transcript variant 2, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr1:213,029,946-213,031,480 Size: 1,535 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr1:213,031,142-213,031,408 Size: 267 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:213,029,946-213,031,480)mRNA (may differ from genome)Protein (88 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsH-INVHGNC
LynxMGIneXtProtOMIMPubMedStanford SOURCE
UniProtKB

-  Comments and Description Text from UniProtKB
  ID: LQK1_HUMAN
DESCRIPTION: RecName: Full=Putative uncharacterized protein LQK1; AltName: Full=FLVCR1 antisense RNA 1;
TISSUE SPECIFICITY: Expressed in a wide variety of tissues.
CAUTION: Product of a dubious gene prediction.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.19 RPKM in Pituitary
Total median expression: 24.62 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -35.1072-0.487 Picture PostScript Text
3' UTR -86.80349-0.249 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q8TAF5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK092887 - Homo sapiens cDNA FLJ35568 fis, clone SPLEN2005727.
AY030238 - Homo sapiens LQK1 hypothetical protein long isoform (LQK1) mRNA, complete cds, alternatively spliced.
AY030239 - Homo sapiens LQK1 hypothetical protein short isoform (LQK1) mRNA, complete cds, alternatively spliced.
DJ031139 - Gene marker which use for analyse sensitivity to treatment cancer with anti-tumor agent combined with radiotheraphy.

-  Other Names for This Gene
  Alternate Gene Symbols: LQK1, LQK1_HUMAN, NR_027286, Q8TAF5, uc001hjs.4
UCSC ID: uc001hjs.5
RefSeq Accession: NR_027286
Protein: Q8TAF5 (aka LQK1_HUMAN)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NR_027286.1
exon count: 2CDS single in 3' UTR: no RNA size: 688
ORF size: 267CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 631.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.