Human Gene ANKRD30B (ENST00000665241.1) Description and Page Index
  Description: Homo sapiens ankyrin repeat domain 30B (ANKRD30B), transcript variant 2, mRNA. (from RefSeq NM_001367607)
Gencode Transcript: ENST00000665241.1
Gencode Gene: ENSG00000180777.14
Transcript (Including UTRs)
   Position: hg38 chr18:14,748,240-14,854,038 Size: 105,799 Total Exon Count: 37 Strand: +
Coding Region
   Position: hg38 chr18:14,748,420-14,853,910 Size: 105,491 Coding Exon Count: 37 

Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:14,748,240-14,854,038)mRNA (may differ from genome)Protein (1406 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsHGNCLynx
MGIOMIMPubMedStanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.16 RPKM in Testis
Total median expression: 16.81 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -59.90180-0.333 Picture PostScript Text
3' UTR -21.50128-0.168 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AF269088 - Homo sapiens breast cancer antigen NY-BR-1.1 mRNA, partial cds.
LP896089 - Sequence 953 from Patent EP3253886.
BC028407 - Homo sapiens ankyrin repeat domain 30B, mRNA (cDNA clone IMAGE:4821910).
AK294693 - Homo sapiens cDNA FLJ60250 complete cds, moderately similar to Ankyrin repeat domain-containing protein 30A.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_001367607, uc288bpv.1
UCSC ID: uc288bpv.1
RefSeq Accession: NM_001367607
CCDS: CCDS54182.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.