Human Gene RPS10-NUDT3 (ENST00000639725.1) Description and Page Index
  Description: Homo sapiens RPS10-NUDT3 readthrough (RPS10-NUDT3), mRNA. (from RefSeq NM_001202470)
RefSeq Summary (NM_006703): NUDT3 belongs to the MutT, or Nudix, protein family. Nudix proteins act as homeostatic checkpoints at important stages in nucleoside phosphate metabolic pathways, guarding against elevated levels of potentially dangerous intermediates, like 8-oxo-dGTP, which promotes AT-to-CG transversions (Safrany et al., 1998 [PubMed 9822604]).[supplied by OMIM, Feb 2011]. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: SRR1660805.223249.1, SRR1660803.243167.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1965299, SAMEA1966682 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## MANE Ensembl match :: ENST00000607016.2/ ENSP00000476119.1 RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END##
Gencode Transcript: ENST00000639725.1
Gencode Gene: ENSG00000270800.3
Transcript (Including UTRs)
   Position: hg38 chr6:34,284,887-34,426,071 Size: 141,185 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg38 chr6:34,288,753-34,425,221 Size: 136,469 Coding Exon Count: 8 

Page IndexSequence and LinksMicroarray ExpressionRNA StructureOther SpeciesmRNA Descriptions
Other NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:34,284,887-34,426,071)mRNA (may differ from genome)Protein (291 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsLynx
MGIPubMedStanford SOURCEUniProtKB

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -8.2040-0.205 Picture PostScript Text
3' UTR -1157.903866-0.300 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGI     
Protein Sequence     
Alignment     

-  Descriptions from all associated GenBank mRNAs
  AF062529 - Homo sapiens clone 486790 diphosphoinositol polyphosphate phosphohydrolase mRNA, complete cds.
BC007727 - Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 3, mRNA (cDNA clone MGC:12752 IMAGE:4303483), complete cds.
AF062530 - Homo sapiens clone 469920 diphosphoinositol polyphosphate phosphohydrolase mRNA, complete cds.
AK313440 - Homo sapiens cDNA, FLJ93979, Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 3 (NUDT3), mRNA.
KJ893244 - Synthetic construct Homo sapiens clone ccsbBroadEn_02638 NUDT3 gene, encodes complete protein.
BT019984 - Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 3 mRNA, complete cds.
BT019985 - Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 3 mRNA, complete cds.
DQ893118 - Synthetic construct clone IMAGE:100005748; FLH193906.01X; RZPDo839D0479D nudix (nucleoside diphosphate linked moiety X)-type motif 3 (NUDT3) gene, encodes complete protein.
DQ896391 - Synthetic construct Homo sapiens clone IMAGE:100010851; FLH193902.01L; RZPDo839D0469D nudix (nucleoside diphosphate linked moiety X)-type motif 3 (NUDT3) gene, encodes complete protein.
AB463951 - Synthetic construct DNA, clone: pF1KB6839, Homo sapiens NUDT3 gene for nudix (nucleoside diphosphate linked moiety X)-type motif 3, without stop codon, in Flexi system.
AK025759 - Homo sapiens cDNA: FLJ22106 fis, clone HEP17675.
BC043178 - Homo sapiens cDNA clone IMAGE:5287836.
AK057088 - Homo sapiens cDNA FLJ32526 fis, clone SMINT2000073.
JD546953 - Sequence 527977 from Patent EP1572962.
DQ591995 - Homo sapiens piRNA piR-59107, complete sequence.
JD396114 - Sequence 377138 from Patent EP1572962.
JD117312 - Sequence 98336 from Patent EP1572962.
JD518063 - Sequence 499087 from Patent EP1572962.
JD199555 - Sequence 180579 from Patent EP1572962.
JD038754 - Sequence 19778 from Patent EP1572962.
DQ573515 - Homo sapiens piRNA piR-41627, complete sequence.
JD475836 - Sequence 456860 from Patent EP1572962.
JD516695 - Sequence 497719 from Patent EP1572962.
JD338187 - Sequence 319211 from Patent EP1572962.
U14972 - Human ribosomal protein S10 mRNA, complete cds.
BC001032 - Homo sapiens ribosomal protein S10, mRNA (cDNA clone MGC:1633 IMAGE:3139393), complete cds.
BC071946 - Homo sapiens ribosomal protein S10, mRNA (cDNA clone MGC:88633 IMAGE:6305105), complete cds.
BC005012 - Homo sapiens ribosomal protein S10, mRNA (cDNA clone MGC:10566 IMAGE:3637658), complete cds.
BC070235 - Homo sapiens ribosomal protein S10, mRNA (cDNA clone MGC:88217 IMAGE:6453788), complete cds.
JD020613 - Sequence 1637 from Patent EP1572962.
JD020277 - Sequence 1301 from Patent EP1572962.
AK311797 - Homo sapiens cDNA, FLJ92058, Homo sapiens ribosomal protein S10 (RPS10), mRNA.
DQ892134 - Synthetic construct clone IMAGE:100004764; FLH183321.01X; RZPDo839A12142D ribosomal protein S10 (RPS10) gene, encodes complete protein.
DQ895328 - Synthetic construct Homo sapiens clone IMAGE:100009788; FLH183317.01L; RZPDo839A12141D ribosomal protein S10 (RPS10) gene, encodes complete protein.
KJ892056 - Synthetic construct Homo sapiens clone ccsbBroadEn_01450 RPS10 gene, encodes complete protein.
Z70761 - H.sapiens mRNA for ribosomal protein S10.
CU674952 - Synthetic construct Homo sapiens gateway clone IMAGE:100020163 5' read RPS10 mRNA.
JD022514 - Sequence 3538 from Patent EP1572962.
JD020116 - Sequence 1140 from Patent EP1572962.
JD029553 - Sequence 10577 from Patent EP1572962.
JD026252 - Sequence 7276 from Patent EP1572962.
JD032182 - Sequence 13206 from Patent EP1572962.
JD034732 - Sequence 15756 from Patent EP1572962.
DQ581788 - Homo sapiens piRNA piR-49900, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A1W2PQS6, NM_001202470, uc063nzp.1, uc063nzp.2
UCSC ID: uc063nzp.2
RefSeq Accession: NM_006703

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.