Human Gene GCNT7 (ENST00000617620.1) Description and Page Index
  Description: glucosaminyl (N-acetyl) transferase family member 7 (from HGNC GCNT7)
Gencode Transcript: ENST00000617620.1
Gencode Gene: ENSG00000124091.9
Transcript (Including UTRs)
   Position: hg38 chr20:56,491,492-56,497,608 Size: 6,117 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg38 chr20:56,491,557-56,497,608 Size: 6,052 Coding Exon Count: 4 

Page IndexSequence and LinksCTDRNA-Seq ExpressionRNA StructureOther Species
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:56,491,492-56,497,608)mRNA (may differ from genome)Protein (429 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsHGNCLynx
MGIPubMedStanford SOURCEUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.35 RPKM in Testis
Total median expression: 4.54 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -13.0065-0.200 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AK131203 - Homo sapiens cDNA FLJ16060 fis, clone TESTI2030728, moderately similar to N-ACETYLLACTOSAMINIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE (EC 2.4.1.150).

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-7433 - mucin core 1 and core 2 O-glycosylation

-  Other Names for This Gene
  Alternate Gene Symbols: A0A087WZE6, AK131203, uc061xww.1
UCSC ID: uc061xww.1
RefSeq Accession: NM_080615

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.