Human Gene KATNAL2 (ENST00000592005.5) Description and Page Index
  Description: katanin catalytic subunit A1 like 2 (from HGNC KATNAL2)
Gencode Transcript: ENST00000592005.5
Gencode Gene: ENSG00000167216.17
Transcript (Including UTRs)
   Position: hg38 chr18:46,917,492-47,098,482 Size: 180,991 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg38 chr18:46,946,873-47,084,395 Size: 137,523 Coding Exon Count: 4 

Page IndexSequence and LinksMalaCardsCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:46,917,492-47,098,482)mRNA (may differ from genome)Protein (105 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsHGNCLynx
MGIPubMedStanford SOURCEUniProtKB

-  MalaCards Disease Associations
  MalaCards Gene Search: KATNAL2
Diseases sorted by gene-association score: tinea capitis (17), dermatophytosis (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.40 RPKM in Testis
Total median expression: 80.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -244.80673-0.364 Picture PostScript Text
3' UTR -85.20357-0.239 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AK309134 - Homo sapiens cDNA, FLJ99175.
BC034999 - Homo sapiens katanin p60 subunit A-like 2, mRNA (cDNA clone MGC:33211 IMAGE:4829800), complete cds.
CU690016 - Synthetic construct Homo sapiens gateway clone IMAGE:100019530 5' read KATNAL2 mRNA.
HQ447324 - Synthetic construct Homo sapiens clone IMAGE:100070640; CCSB001887_02 katanin p60 subunit A-like 2 (KATNAL2) gene, encodes complete protein.
KJ899704 - Synthetic construct Homo sapiens clone ccsbBroadEn_09098 KATNAL2 gene, encodes complete protein.
AL512748 - Homo sapiens mRNA; cDNA DKFZp667C165 (from clone DKFZp667C165).
JD144059 - Sequence 125083 from Patent EP1572962.
JD230268 - Sequence 211292 from Patent EP1572962.
JD257714 - Sequence 238738 from Patent EP1572962.
JD270183 - Sequence 251207 from Patent EP1572962.
JD534491 - Sequence 515515 from Patent EP1572962.
JD451717 - Sequence 432741 from Patent EP1572962.
JD185292 - Sequence 166316 from Patent EP1572962.
JD185295 - Sequence 166319 from Patent EP1572962.
JD185294 - Sequence 166318 from Patent EP1572962.
JD185293 - Sequence 166317 from Patent EP1572962.
JD366272 - Sequence 347296 from Patent EP1572962.
JD366275 - Sequence 347299 from Patent EP1572962.
JD366274 - Sequence 347298 from Patent EP1572962.
JD149289 - Sequence 130313 from Patent EP1572962.
JD149295 - Sequence 130319 from Patent EP1572962.
JD149290 - Sequence 130314 from Patent EP1572962.
JD517380 - Sequence 498404 from Patent EP1572962.
JD517381 - Sequence 498405 from Patent EP1572962.
JD266232 - Sequence 247256 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK309134, K7EQ00, uc060owq.1
UCSC ID: uc060owq.1
RefSeq Accession: NM_001353909

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.