Human Gene ZSCAN10 (ENST00000572548.1) Description and Page Index
  Description: Contains 1 SCAN box domain. (from UniProt I3NI43)
Gencode Transcript: ENST00000572548.1
Gencode Gene: ENSG00000130182.8
Transcript (Including UTRs)
   Position: hg38 chr16:3,090,552-3,099,261 Size: 8,710 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg38 chr16:3,091,588-3,092,937 Size: 1,350 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA-Seq ExpressionRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:3,090,552-3,099,261)mRNA (may differ from genome)Protein (111 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsHGNCLynx
MGIPubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: I3NI43_HUMAN
DESCRIPTION: SubName: Full=Zinc finger and SCAN domain-containing protein 10;
SIMILARITY: Contains 1 SCAN box domain.
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.21 RPKM in Brain - Cerebellum
Total median expression: 1.01 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -48.90139-0.352 Picture PostScript Text
3' UTR -45.80143-0.320 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008916 - Retrov_capsid_C
IPR003309 - Tscrpt_reg_SCAN

Pfam Domains:
PF02023 - SCAN domain

ModBase Predicted Comparative 3D Structure on I3NI43
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003700 transcription factor activity, sequence-specific DNA binding

Biological Process:
GO:0006355 regulation of transcription, DNA-templated

Cellular Component:
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  AK027455 - Homo sapiens cDNA FLJ14549 fis, clone NT2RM2001670, weakly similar to ZINC FINGER PROTEIN 29.
AK074736 - Homo sapiens cDNA FLJ90255 fis, clone NT2RM4000326, highly similar to Zinc finger protein 206.
BC114452 - Homo sapiens zinc finger and SCAN domain containing 10, mRNA (cDNA clone IMAGE:40007610), partial cds.
BC167837 - Synthetic construct Homo sapiens clone IMAGE:100068227, MGC:195844 zinc finger and SCAN domain containing 10 (ZSCAN10) mRNA, encodes complete protein.
BC111367 - Homo sapiens cDNA clone IMAGE:7481438.
JD542629 - Sequence 523653 from Patent EP1572962.
JD065514 - Sequence 46538 from Patent EP1572962.
JD477874 - Sequence 458898 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC111367, I3NI43, I3NI43_HUMAN, uc059pve.1, uc059pve.2
UCSC ID: uc059pve.2
RefSeq Accession: NM_001365272
Protein: I3NI43

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.