Human Gene EPPK1 (ENST00000568225.2) Description and Page Index
  Description: epiplakin 1 (from HGNC EPPK1)
Gencode Transcript: ENST00000568225.2
Gencode Gene: ENSG00000261150.2
Transcript (Including UTRs)
   Position: hg38 chr8:143,857,737-143,873,266 Size: 15,530 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg38 chr8:143,857,987-143,873,178 Size: 15,192 Coding Exon Count: 1 

Page IndexSequence and LinksMalaCardsCTDRNA StructureOther Species
mRNA DescriptionsOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:143,857,737-143,873,266)mRNA (may differ from genome)Protein (5063 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaCGAP
EnsemblExonPrimerGeneCardsHGNCLynxMGI
PubMedStanford SOURCEUniProtKBWikipedia

-  MalaCards Disease Associations
  MalaCards Gene Search: EPPK1
Diseases sorted by gene-association score: melanotic medulloblastoma (17), vater/vacterl association (13), vacterl association (9)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -17.9088-0.203 Picture PostScript Text
3' UTR -48.50250-0.194 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AL137725 - Homo sapiens mRNA; cDNA DKFZp434G0719 (from clone DKFZp434G0719); partial cds.
AB051895 - Homo sapiens EPPK1 mRNA for epiplakin 1, complete cds.
JD493034 - Sequence 474058 from Patent EP1572962.
JD458500 - Sequence 439524 from Patent EP1572962.
JD271286 - Sequence 252310 from Patent EP1572962.
JD458499 - Sequence 439523 from Patent EP1572962.
JD189477 - Sequence 170501 from Patent EP1572962.
JD056223 - Sequence 37247 from Patent EP1572962.
JD128940 - Sequence 109964 from Patent EP1572962.
JD458430 - Sequence 439454 from Patent EP1572962.
JD128979 - Sequence 110003 from Patent EP1572962.
JD458477 - Sequence 439501 from Patent EP1572962.
JD458282 - Sequence 439306 from Patent EP1572962.
JD189477 - Sequence 170501 from Patent EP1572962.
JD056223 - Sequence 37247 from Patent EP1572962.
JD128940 - Sequence 109964 from Patent EP1572962.
JD458430 - Sequence 439454 from Patent EP1572962.
JD128979 - Sequence 110003 from Patent EP1572962.
JD458477 - Sequence 439501 from Patent EP1572962.
JD462537 - Sequence 443561 from Patent EP1572962.
JD458500 - Sequence 439524 from Patent EP1572962.
JD271286 - Sequence 252310 from Patent EP1572962.
JD458499 - Sequence 439523 from Patent EP1572962.
JD232161 - Sequence 213185 from Patent EP1572962.
JD103880 - Sequence 84904 from Patent EP1572962.
JD074497 - Sequence 55521 from Patent EP1572962.
JD252478 - Sequence 233502 from Patent EP1572962.
JD275828 - Sequence 256852 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A075B730, JD493034, uc064rfx.1
UCSC ID: uc064rfx.1
Representative RNA: JD493034
CCDS: CCDS75800.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.