Human Gene TRPT1 (ENST00000546089.5) Description and Page Index
  Description: Homo sapiens tRNA phosphotransferase 1 (TRPT1), transcript variant 7, mRNA. (from RefSeq NM_001330298)
Gencode Transcript: ENST00000546089.5
Gencode Gene: ENSG00000149743.14
Transcript (Including UTRs)
   Position: hg38 chr11:64,223,853-64,225,870 Size: 2,018 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg38 chr11:64,223,876-64,225,508 Size: 1,633 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Methods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:64,223,853-64,225,870)mRNA (may differ from genome)Protein (167 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsHGNC
LynxMGIOMIMPubMedStanford SOURCEUniProtKB
Wikipedia

-  Comments and Description Text from UniProtKB
  ID: F5H6B6_HUMAN
DESCRIPTION: SubName: Full=tRNA 2'-phosphotransferase 1;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 59.64 RPKM in Muscle - Skeletal
Total median expression: 1362.22 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -58.00157-0.369 Picture PostScript Text
3' UTR 0.00230.000 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002745 - Ptrans_KptA/Tpt1

Pfam Domains:
PF01885 - RNA 2'-phosphotransferase, Tpt1 / KptA family

ModBase Predicted Comparative 3D Structure on F5H6B6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0016772 transferase activity, transferring phosphorus-containing groups

Biological Process:
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation


-  Descriptions from all associated GenBank mRNAs
  BC005133 - Homo sapiens tRNA phosphotransferase 1, mRNA (cDNA clone MGC:11134 IMAGE:3836683), complete cds.
AK026364 - Homo sapiens cDNA: FLJ22711 fis, clone HSI13348.
AY211494 - Homo sapiens tRNA splicing 2' phosphotransferase 1 mRNA, complete cds.
JD485215 - Sequence 466239 from Patent EP1572962.
HQ448355 - Synthetic construct Homo sapiens clone IMAGE:100071779; CCSB004358_02 tRNA phosphotransferase 1 (TRPT1) gene, encodes complete protein.
KJ899716 - Synthetic construct Homo sapiens clone ccsbBroadEn_09110 TRPT1 gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: F5H6B6, F5H6B6_HUMAN, NM_001330298, uc058cui.1
UCSC ID: uc058cui.1
RefSeq Accession: NM_001160393
Protein: F5H6B6 CCDS: CCDS81579.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.