Human Gene SCARNA5 (ENST00000516201.1) Description and Page Index
  Description: Homo sapiens small Cajal body-specific RNA 5 (SCARNA5), guide RNA. (from RefSeq NR_003008)
Gencode Transcript: ENST00000516201.1
Gencode Gene: ENSG00000252010.1
Transcript (Including UTRs)
   Position: hg38 chr2:233,275,727-233,276,002 Size: 276 Total Exon Count: 1 Strand: +

Page IndexSequence and LinksRNA-Seq ExpressionOther SpeciesmRNA DescriptionsOther Names
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr2:233,275,727-233,276,002)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerHGNCLynxOMIM
PubMedStanford SOURCEWikipedia

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.33 RPKM in Brain - Putamen (basal ganglia)
Total median expression: 6.47 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  AY077737 - Homo sapiens U87 small nuclear RNA, complete sequence.
LP896187 - Sequence 1051 from Patent EP3253886.
DQ598272 - Homo sapiens piRNA piR-36338, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_003008, uc002vue.1, uc002vue.2
UCSC ID: uc002vue.2
RefSeq Accession: NR_003008

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.