Human Gene ANKDD1A (ENST00000496660.5) Description and Page Index
  Description: ankyrin repeat and death domain containing 1A (from HGNC ANKDD1A)
Gencode Transcript: ENST00000496660.5
Gencode Gene: ENSG00000166839.17
Transcript (Including UTRs)
   Position: hg38 chr15:64,911,918-64,932,514 Size: 20,597 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg38 chr15:64,921,927-64,931,636 Size: 9,710 Coding Exon Count: 5 

Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:64,911,918-64,932,514)mRNA (may differ from genome)Protein (181 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneCardsHGNCLynxMGI
PubMedStanford SOURCEUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.82 RPKM in Spleen
Total median expression: 223.01 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.2053-0.230 Picture PostScript Text
3' UTR -261.50878-0.298 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AK311036 - Homo sapiens cDNA, FLJ18078.
AK098736 - Homo sapiens cDNA FLJ25870 fis, clone CBR02141.
AK075298 - Homo sapiens cDNA FLJ90817 fis, clone Y79AA1001090, weakly similar to NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT.
BC110610 - Homo sapiens RAS protein activator like 2, mRNA (cDNA clone IMAGE:40028910).
AK307698 - Homo sapiens cDNA, FLJ97646.
JD178271 - Sequence 159295 from Patent EP1572962.
JD441562 - Sequence 422586 from Patent EP1572962.
BC027350 - Homo sapiens ankyrin repeat and death domain containing 1A, mRNA (cDNA clone IMAGE:4387632), partial cds.
KJ904224 - Synthetic construct Homo sapiens clone ccsbBroadEn_13618 ANKDD1A gene, encodes complete protein.
BC101273 - Homo sapiens ankyrin repeat and death domain containing 1A, mRNA (cDNA clone MGC:120305 IMAGE:40024165), complete cds.
BC101274 - Homo sapiens ankyrin repeat and death domain containing 1A, mRNA (cDNA clone MGC:120306 IMAGE:40024168), complete cds.
BC101275 - Homo sapiens ankyrin repeat and death domain containing 1A, mRNA (cDNA clone MGC:120307 IMAGE:40024170), complete cds.
BC047571 - Homo sapiens ankyrin repeat and death domain containing 1A, mRNA (cDNA clone IMAGE:4791860), with apparent retained intron.
BC101276 - Homo sapiens ankyrin repeat and death domain containing 1A, mRNA (cDNA clone IMAGE:40024171), partial cds.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0C4DGA8, AK098736, uc002anz.1, uc002anz.2, uc002anz.3, uc002anz.4
UCSC ID: uc002anz.4
RefSeq Accession: NM_182703

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.