The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
ModBase Predicted Comparative 3D Structure on Q68CX2
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
AK125378 - Homo sapiens cDNA FLJ43388 fis, clone OCBBF2007028, highly similar to RUN and SH3 domain-containing protein 1. BC025680 - Homo sapiens RUN and SH3 domain containing 1, mRNA (cDNA clone IMAGE:5204626), with apparent retained intron. AK055451 - Homo sapiens cDNA FLJ30889 fis, clone FEBRA2005114, highly similar to Homo sapiens mRNA for NESCA. AK314559 - Homo sapiens cDNA, FLJ95383, highly similar to Homo sapiens RUN and SH3 domain containing 1 (RUSC1), mRNA. CR749671 - Homo sapiens mRNA; cDNA DKFZp761A1822 (from clone DKFZp761A1822). BC052277 - Homo sapiens RUN and SH3 domain containing 1, mRNA (cDNA clone IMAGE:4548018), complete cds. AK298730 - Homo sapiens cDNA FLJ55745 complete cds, highly similar to RUN and SH3 domain-containing protein 1. AK093777 - Homo sapiens cDNA FLJ36458 fis, clone THYMU2014599, highly similar to Nesca protein. AX748300 - Sequence 1825 from Patent EP1308459. BC001045 - Homo sapiens RUN and SH3 domain containing 1, mRNA (cDNA clone IMAGE:3505458), complete cds. AK307736 - Homo sapiens cDNA, FLJ97684. AK074485 - Homo sapiens cDNA FLJ90004 fis, clone HEMBA1000006. AB026894 - Homo sapiens mRNA for NESCA, complete cds. JD318158 - Sequence 299182 from Patent EP1572962. AK074982 - Homo sapiens cDNA FLJ90501 fis, clone NT2RP3004067, highly similar to RUN and SH3 domain-containing protein 1. BC028055 - Homo sapiens, Similar to nesca protein, clone IMAGE:5108891, mRNA. BC004293 - Homo sapiens, clone IMAGE:3621946, mRNA, partial cds. BX640612 - Homo sapiens mRNA; cDNA DKFZp686F12178 (from clone DKFZp686F12178). CU674524 - Synthetic construct Homo sapiens gateway clone IMAGE:100018280 5' read RUSC1 mRNA. AB590126 - Synthetic construct DNA, clone: pFN21AE1122, Homo sapiens RUSC1 gene for RUN and SH3 domain containing 1, without stop codon, in Flexi system. DQ895385 - Synthetic construct Homo sapiens clone IMAGE:100009845; FLH183888.01L; RZPDo839H10141D RUN and SH3 domain containing 1 (RUSC1) gene, encodes complete protein. KJ893417 - Synthetic construct Homo sapiens clone ccsbBroadEn_02811 RUSC1 gene, encodes complete protein. DQ893622 - Synthetic construct clone IMAGE:100006252; FLH183892.01X; RZPDo839H10142D RUN and SH3 domain containing 1 (RUSC1) gene, encodes complete protein. AL080083 - Homo sapiens mRNA; cDNA DKFZp564G1762 (from clone DKFZp564G1762); partial cds.