The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
ModBase Predicted Comparative 3D Structure on A1A4F0
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
BC126187 - Homo sapiens chromosome 3 open reading frame 55, mRNA (cDNA clone MGC:161465 IMAGE:8991903), complete cds. BC126189 - Homo sapiens chromosome 3 open reading frame 55, mRNA (cDNA clone MGC:161467 IMAGE:8991905), complete cds. BC144066 - Homo sapiens cDNA clone IMAGE:9052586. BC029129 - Homo sapiens chromosome 3 open reading frame 55, mRNA (cDNA clone IMAGE:5197576), partial cds. BC010062 - Homo sapiens chromosome 3 open reading frame 55, mRNA (cDNA clone IMAGE:3953648). JD198902 - Sequence 179926 from Patent EP1572962. JD465554 - Sequence 446578 from Patent EP1572962. JD132592 - Sequence 113616 from Patent EP1572962. HQ258045 - Synthetic construct Homo sapiens clone IMAGE:100072354 chromosome 3 open reading frame 55 (C3orf55), transcript variant 3 (C3orf55) gene, encodes complete protein. KJ895668 - Synthetic construct Homo sapiens clone ccsbBroadEn_05062 C3orf55 gene, encodes complete protein.