Human Gene SLC66A1L (ENST00000459838.6) Description and Page Index
  Description: Homo sapiens solute carrier family 66 member 1 like (SLC66A1L), transcript variant 5, mRNA. (from RefSeq NM_001243729)
Gencode Transcript: ENST00000459838.6
Gencode Gene: ENSG00000174899.11
Transcript (Including UTRs)
   Position: hg38 chr3:157,543,344-157,578,891 Size: 35,548 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg38 chr3:157,553,258-157,578,284 Size: 25,027 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsRNA-Seq ExpressionRNA StructureProtein Structure
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr3:157,543,344-157,578,891)mRNA (may differ from genome)Protein (72 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerGeneCardsMGIneXtProtPubMed
Stanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
DESCRIPTION: RecName: Full=Putative uncharacterized protein C3orf55;
SEQUENCE CAUTION: Sequence=AAH29129.1; Type=Erroneous translation; Note=Wrong choice of CDS;

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.33 RPKM in Adipose - Subcutaneous
Total median expression: 33.33 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -67.20194-0.346 Picture PostScript Text
3' UTR -122.80607-0.202 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on A1A4F0
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  BC126187 - Homo sapiens chromosome 3 open reading frame 55, mRNA (cDNA clone MGC:161465 IMAGE:8991903), complete cds.
BC126189 - Homo sapiens chromosome 3 open reading frame 55, mRNA (cDNA clone MGC:161467 IMAGE:8991905), complete cds.
BC144066 - Homo sapiens cDNA clone IMAGE:9052586.
BC029129 - Homo sapiens chromosome 3 open reading frame 55, mRNA (cDNA clone IMAGE:5197576), partial cds.
BC010062 - Homo sapiens chromosome 3 open reading frame 55, mRNA (cDNA clone IMAGE:3953648).
JD198902 - Sequence 179926 from Patent EP1572962.
JD465554 - Sequence 446578 from Patent EP1572962.
JD132592 - Sequence 113616 from Patent EP1572962.
HQ258045 - Synthetic construct Homo sapiens clone IMAGE:100072354 chromosome 3 open reading frame 55 (C3orf55), transcript variant 3 (C3orf55) gene, encodes complete protein.
KJ895668 - Synthetic construct Homo sapiens clone ccsbBroadEn_05062 C3orf55 gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: A1A4F0, C3orf55, CC055_HUMAN, NM_001243729, Q8N6Q6, uc011bot.1, uc011bot.2, uc011bot.3, uc011bot.4
UCSC ID: uc011bot.4
RefSeq Accession: NM_001243729
Protein: A1A4F0 (aka CC055_HUMAN)
CCDS: CCDS58859.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.