Human Gene C1orf167 (ENST00000433342.5) Description and Page Index
  Description: Homo sapiens chromosome 1 open reading frame 167 (C1orf167), mRNA. (from RefSeq NM_001010881)
Gencode Transcript: ENST00000433342.5
Gencode Gene: ENSG00000215910.7
Transcript (Including UTRs)
   Position: hg38 chr1:11,761,787-11,789,584 Size: 27,798 Total Exon Count: 21 Strand: +
Coding Region
   Position: hg38 chr1:11,761,787-11,789,446 Size: 27,660 Coding Exon Count: 21 

Page IndexSequence and LinksUniProtKB CommentsRNA-Seq ExpressionRNA StructureProtein Structure
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:11,761,787-11,789,584)mRNA (may differ from genome)Protein (1468 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsHGNCLynx
MGIneXtProtPubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: CA167_HUMAN
DESCRIPTION: RecName: Full=Uncharacterized protein C1orf167;
SEQUENCE CAUTION: Sequence=CAI15881.1; Type=Erroneous gene model prediction;

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.55 RPKM in Testis
Total median expression: 14.81 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -29.60138-0.214 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q5SNV9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC128091 - Homo sapiens chromosome 1 open reading frame 167, mRNA (cDNA clone IMAGE:40108751), partial cds.
BC128092 - Homo sapiens chromosome 1 open reading frame 167, mRNA (cDNA clone IMAGE:40108753), partial cds.
AL833920 - Homo sapiens mRNA; cDNA DKFZp434E1410 (from clone DKFZp434E1410).
AL834308 - Homo sapiens mRNA; cDNA DKFZp434F1313 (from clone DKFZp434F1313).
AL833926 - Homo sapiens mRNA; cDNA DKFZp434E1111 (from clone DKFZp434E1111).
BC031692 - Homo sapiens chromosome 1 open reading frame 167, mRNA (cDNA clone IMAGE:5165564), partial cds.
AF398935 - Homo sapiens uknown mRNA, complete sequence.
JD333931 - Sequence 314955 from Patent EP1572962.
JD187991 - Sequence 169015 from Patent EP1572962.
JD039855 - Sequence 20879 from Patent EP1572962.
JD551921 - Sequence 532945 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: CA167_HUMAN, NM_001010881, Q5SNV9, Q8NDA9, Q8NDF3, uc057chg.1
UCSC ID: uc057chg.1
RefSeq Accession: NM_001010881
Protein: Q5SNV9 (aka CA167_HUMAN)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.