Human Gene FAM92A (ENST00000423990.6) Description and Page Index
  Description: Homo sapiens family with sequence similarity 92 member A (FAM92A), transcript variant 2, mRNA. (from RefSeq NM_001283034)
Gencode Transcript: ENST00000423990.6
Gencode Gene: ENSG00000188343.13
Transcript (Including UTRs)
   Position: hg38 chr8:93,700,582-93,728,389 Size: 27,808 Total Exon Count: 8 Strand: +
Coding Region
   Position: hg38 chr8:93,700,648-93,728,297 Size: 27,650 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:93,700,582-93,728,389)mRNA (may differ from genome)Protein (251 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerGeneCardsHPRDLynxMGI
neXtProtOMIMPubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: F92A1_HUMAN
DESCRIPTION: RecName: Full=Protein FAM92A1;
SIMILARITY: Belongs to the FAM92 family.
SEQUENCE CAUTION: Sequence=AAH14598.2; Type=Erroneous initiation; Sequence=AAI08708.1; Type=Erroneous initiation;

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 28.80 RPKM in Testis
Total median expression: 173.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -25.7066-0.389 Picture PostScript Text
3' UTR -7.4092-0.080 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009602 - FAM92

Pfam Domains:
PF06730 - FAM92 protein

ModBase Predicted Comparative 3D Structure on A1XBS5
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0030030 cell projection organization
GO:0060271 cilium assembly

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005814 centriole
GO:0005856 cytoskeleton
GO:0036064 ciliary basal body
GO:0042995 cell projection
GO:0097546 ciliary base


-  Descriptions from all associated GenBank mRNAs
  BC014598 - Homo sapiens family with sequence similarity 92, member A1, mRNA (cDNA clone IMAGE:4826612), partial cds.
BC108707 - Homo sapiens family with sequence similarity 92, member A1, mRNA (cDNA clone IMAGE:6514757), partial cds.
CR627475 - Homo sapiens mRNA; cDNA DKFZp564I0278 (from clone DKFZp564I0278).
DQ327715 - Homo sapiens hypothetical protein HL1 mRNA, complete cds, alternatively spliced.
DQ327716 - Homo sapiens hypothetical protein HL2 mRNA, complete cds, alternatively spliced.
AK096298 - Homo sapiens cDNA FLJ38979 fis, clone NT2RI2004608.
CU677061 - Synthetic construct Homo sapiens gateway clone IMAGE:100018690 5' read FAM92A1 mRNA.
KJ903797 - Synthetic construct Homo sapiens clone ccsbBroadEn_13191 FAM92A1 gene, encodes complete protein.
JD042424 - Sequence 23448 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A1XBS4, A1XBS5, F92A1_HUMAN, FAM92A1, NM_001283034, Q32ND3, Q6AHW7, Q8N8R1, Q96L09, uc064onx.1
UCSC ID: uc064onx.1
RefSeq Accession: NR_156453
Protein: A1XBS5 (aka F92A1_HUMAN)
CCDS: CCDS64933.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.